Sculpting protein conformations: Difference between revisions
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* No official documentation for using ''Twister'' from the ''Samson'' team in March, 2020, but see the step by step video at [http://tinyurl.com/sculpting-proteins tinyurl.com/sculpting-proteins]. | * No official documentation for using ''Twister'' from the ''Samson'' team in March, 2020, but see the step by step video at [http://tinyurl.com/sculpting-proteins tinyurl.com/sculpting-proteins]. | ||
| width="600" |<qt>file=1al1-sculpting-samson-v5-600px.mp4|width=600|height=307|autoplay=false|controller=true|loop=false</qt> | | width="600" |<qt>file=1al1-sculpting-samson-v5-600px.mp4|width=600|height=307|autoplay=false|controller=true|loop=false</qt> | ||
Sculpting [[1al1|1AL1]] with Samson (screen capture}. An anchor point (gold ball) was set at left before the movie starts. Mid-way, an anchor point was set in the middle of the polypeptide. [https://s3.us-east-2.amazonaws.com/molviz.org/downloads/Samson/1al1-sculpting-samson-v5.mp4 Higher resolution version]. ''Minimize'' was not turned on in this movie. | Sculpting [[1al1|1AL1]] with Twister in Samson (screen capture}. An anchor point (gold ball) was set at left before the movie starts. Mid-way, an anchor point was set in the middle of the polypeptide. [https://s3.us-east-2.amazonaws.com/molviz.org/downloads/Samson/1al1-sculpting-samson-v5.mp4 Higher resolution version]. ''Minimize'' was not turned on in this movie. | ||
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* [https://pymol.org/dokuwiki/doku.php?id=sculpting sculpting] at pymol.org lists a few commands. | * [https://pymol.org/dokuwiki/doku.php?id=sculpting sculpting] at pymol.org lists a few commands. | ||
*[https://pymol.org/dokuwiki/doku.php?id=setting:sculpt setting:sculpt] at pymol.org lists many commands. | *[https://pymol.org/dokuwiki/doku.php?id=setting:sculpt setting:sculpt] at pymol.org lists many commands. | ||
*[https://pymolwiki.org/index.php/Modeling_and_Editing_Structures Modeling and Editing Structures] at pymolwiki.org explains command-based methods for sculpting in PyMOL. | |||
==Sculpt (defunct)== | ==Sculpt (defunct)== | ||
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*[[User:Wayne Decatur/Molecular modeling tools]] | *[[User:Wayne Decatur/Molecular modeling tools]] | ||
*[[Molecular modeling and visualization software]] | *[[Molecular modeling and visualization software]] | ||
* See the list of links above under PyMOL. | |||
==References== | ==References== | ||
<references /> | <references /> | ||