Nitrogenase: Difference between revisions

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<StructureSection load="1N2C" size="400" color="white" frame="true" align="right" caption="Nitrogenase complex: α (grey and green) and β (pink and yellow) chains, nitrogenase iron protein ( purple,cyan, red and gold), showing Fe-Mo-S cluster complex with ADP, adipic acid, AlF4, Ca+2 and Mg+2 ions [[1n2c]]">
<StructureSection load="1N2C" size="350" color="white" caption="Nitrogenase complex: α (grey and green) and β (pink and yellow) chains, nitrogenase iron protein ( purple,cyan, red and gold), showing Fe-Mo-S cluster complex with ADP, adipic acid, AlF4, Ca+2 and Mg+2 ions [[1n2c]]">
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==Function==
 
'''Nitrogenase''' (Nase) is an enzyme that fixes atmospheric nitrogen (N<sub>2</sub>) into ammonia. Though abundantly present in the atmosphere, most organisms cannot utilize N<sub>2</sub> directly, and must instead take it in through other forms, like ammonia or nitrate. The triple bond in N<sub>2</sub> is highly resistant to changes in oxidation state, and nitrogenases, found only in nitrogen-fixing bacteria, are the only proteins capable of reducing N<sub>2</sub> to ammonia.
'''Nitrogenase''' (Nase) is an enzyme that fixes atmospheric nitrogen (N<sub>2</sub>) into ammonia. Though abundantly present in the atmosphere, most organisms cannot utilize N<sub>2</sub> directly, and must instead take it in through other forms, like ammonia or nitrate. The triple bond in N<sub>2</sub> is highly resistant to changes in oxidation state, and nitrogenases, found only in nitrogen-fixing bacteria, are the only proteins capable of reducing N<sub>2</sub> to ammonia.


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For these reasons, binding of Fe protein to FeMo protein results in hydrolysis of ATP. Additionally, the 4Fe:4S cluster is lowered close enough to the metal-sulfur clusters of the FeMo protein that electron transfer can occur. All three clusters found in the Fe protein-FeMo protein complex can be seen <scene name='Sandbox_10/1n2c_clusters/2'>here</scene>. Once the electrons have passed from the 4Fe:4S cluster of the Fe protein to the 8Fe:7S cluster of the FeMo protein, they then transfer to the 7Fe:Mo:9S:homocitrate:X cluster where X is an unidentified light atom. It is at this cluster where reduction of N<sub>2</sub> and H<sup>+</sup> occur. The exact mechanism of reduction, however, is still unknown.
For these reasons, binding of Fe protein to FeMo protein results in hydrolysis of ATP. Additionally, the 4Fe:4S cluster is lowered close enough to the metal-sulfur clusters of the FeMo protein that electron transfer can occur. All three clusters found in the Fe protein-FeMo protein complex can be seen <scene name='Sandbox_10/1n2c_clusters/2'>here</scene>. Once the electrons have passed from the 4Fe:4S cluster of the Fe protein to the 8Fe:7S cluster of the FeMo protein, they then transfer to the 7Fe:Mo:9S:homocitrate:X cluster where X is an unidentified light atom. It is at this cluster where reduction of N<sub>2</sub> and H<sup>+</sup> occur. The exact mechanism of reduction, however, is still unknown.
</StructureSection>


==3D structure of Nitrogenase==
==3D structure of Nitrogenase==
[[Nitrogenase 3D structures]]


Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
</StructureSection>
 
===Nase Mo-Fe===
 
[[3pdi]] – AvNase α+β subunit [Fe4S4 Fe8S9] – ''Azotobacter vinelandii''<br />
[[2kic]] – AvNase γ subunit – NMR<br />
[[3k1a]], [[1m1n]], [[2min]], [[3min]], [[3u7q]] – AvNase α+β subunit [CFe7MoS9 Fe8S7]<br />
[[4nd8]] - AvNase α+β subunit [CFe7MoS9 Fe8S7 Fe+3]<br />
[[1l5h]] - AvNase α+β subunit [Fe8S7]<br />
[[1h1l]], [[1qgu]], [[1qh8]] - KpNase α+β subunit [Fe7MoS9 Fe8S7] – ''Klebsiella pneumoniae''<br />
[[1qh1]] - KpNase α+β subunit + iron protein 1 [Fe7MoS9 Fe8S7]<br />
[[1fp4]] - AvNase α+β subunit (mutant) [Fe7MoS9 Fe8S8]<br />
[[1mio]] - CpNase α+β subunit (mutant) [Fe7MoS9 Fe8S8] - ''Clostridium pasteurianum''<br />
[[2afh]], [[1m1y]], [[1g20]] - AvNase α+β subunit + iron protein 1 [Fe4S4 Fe7MoS9 Fe8S7]<br />
[[2afi]], [[2afk]], [[1m34]], [[1g21]] - AvNase α+β subunit + iron protein 1 [Fe4S4 Fe7MoS9 Fe8S7] + nucleotide<br />
[[1n2c]] - AvNase α+β subunit + iron protein 1 [Fe4S4 Fe7MoS9 Fe8S7] + AlF4<br />
 
===Nase iron protein===
 
[[2c8v]] – AvNase iron protein 1 [FeS]<br />
[[1g1m]], [[1g5p]], [[2nip]] - AvNase iron protein 1 [Fe4S4]<br />
[[1cp2]] - CpNase iron protein 1 [Fe4S4] <br />
[[1fp6]], [[1nip]] - AvNase iron protein 1 [Fe4S4] + ADP<br />
[[1xcp]], [[1xd8]], [[1xdb]], [[1rw4]], [[1de0]] - AvNase iron protein 1 (mutant) [Fe4S4]<br />
[[1xd9]] - AvNase iron protein 1 (mutant) [Fe4S4] + MgADP<br />


== References ==
== References ==

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Student, Eran Hodis, David Canner, Michal Harel, Alexander Berchansky, Joel L. Sussman