CBI Molecules: Difference between revisions

Jump to navigation Jump to search
No edit summary
 
(33 intermediate revisions by 20 users not shown)
Line 10: Line 10:
==Molecules==
==Molecules==
'''** Designates CBI Molecules Featured on [http://www.umass.edu/cbi/ CBI website]'''
'''** Designates CBI Molecules Featured on [http://www.umass.edu/cbi/ CBI website]'''
[http://chamberslab.com/wp/ Chambers Lab]
: '''[[Molecular Playground/Glutamate Receptor]]''',  Amanda Hussey, Steve McCarron, Rosie Combs-Bachmann, Mariel Feliciano


[http://www.chem.umass.edu/~chenlab/index.HTML Chen Lab]
[http://www.chem.umass.edu/~chenlab/index.HTML Chen Lab]


: '''[[Molecular Playground/ClyA]]''', Bib Yang
: '''[[Molecular Playground/ClyA]]''', Monifa Fahie, Bib Yang '''Revised 2014'''
: '''[[Molecular Playground/OmpG]]''', Christina Chisholm
: '''[[Molecular Playground/OmpG]]''', Christina Chisholm, Monifa Fahie, Bib Yang '''Revised 2014'''




[http://openwetware.org/wiki/Chien Chien Lab]
[http://openwetware.org/wiki/Chien Chien Lab]


: '''[[Molecular Playground/ClpP]]''', Lisa Hernandez, Rob Vass '''New 2014'''
: '''[[Molecular Playground/Homo-dimeric RcdA]]''', Kamal K. Joshi  
: '''[[Molecular Playground/Homo-dimeric RcdA]]''', Kamal K. Joshi  
: **'''[[Molecular Playground/Hexameric ClpX]]''', Joanne Lau '''Best CBI Molecule 2011'''
: **'''[[Molecular Playground/Hexameric ClpX]]''', Joanne Lau '''Best CBI Molecule 2011'''
Line 30: Line 26:


Farkas Lab
Farkas Lab
 
: '''[[Molecular Playground/CLOCK:BMAL1 heterodimer complex]]''', Hui-Hsien Lin, Joseph Hardie, Michael Mingroni '''New 2014'''  
 
Forbes Lab
 
: '''[[Molecular Playground/CheR]]''', Miaomin Zhang
: '''[[Molecular Playground/RBP]]''', Jan Panteli
: '''[[Molecular Playground/TRAIL]]''',  Charley Swofford




Line 47: Line 37:
[http://people.chem.umass.edu/gieraschlab/ Gierasch Lab]
[http://people.chem.umass.edu/gieraschlab/ Gierasch Lab]


: '''[[Molecular_Playground/DnaK]]''', Joseph Tilitsky, New 2014
: '''[[CRABP I ( Cellular Retinoic Acid Binding Protein )|Molecular Playground/CRABP I]]''', Kristine Faye Pobre, Mylene Ferrolino,Mangai Periasamy  '''Best Overall CBI Molecule 2010'''
: '''[[CRABP I ( Cellular Retinoic Acid Binding Protein )|Molecular Playground/CRABP I]]''', Kristine Faye Pobre, Mylene Ferrolino,Mangai Periasamy  '''Best Overall CBI Molecule 2010'''
: '''[[Molecular Playground/CRABP I (Cellular Retinoic Acid Binding Protein)]]''', Gustavo Elberto Epalza Sanchez
: '''[[Molecular Playground/CRABP I (Cellular Retinoic Acid Binding Protein)]]''', Gustavo Elberto Epalza Sanchez
Line 66: Line 57:
Hebert Lab
Hebert Lab


: '''[[Molecular_Playground/Hsp70-Hsp90]]''',  Jill Graham
: '''[[Molecular_Playground/Hsp70-Hsp90]]''',  Jill Graham "Revised 2014"
: '''[[Molecular_Playground/ERDj5]]''',  Lydia Lamriben
: '''[[Molecular_Playground/ERDj5]]''',  Lydia Lamriben
: '''[[Molecular Playground/Saposin C]]''', Abla Tannous
: '''[[Molecular Playground/Saposin C]]''', Abla Tannous
Line 74: Line 65:
[http://people.biochem.umass.edu/aheuck/aph.html Heuck Lab]
[http://people.biochem.umass.edu/aheuck/aph.html Heuck Lab]


: '''[[Molecular_Playground/Pcr H]]''',  Fabian Romano, Carolina Morell-Pérez
: '''[[Molecular_Playground/Pcr H]]''',  Fabian Romano, Carolina Morell-Pérez, Yuzhou Tang
 
 
[http://people.chem.umass.edu/mholden/ Holden Lab]
 
: '''[[Molecular Playground/Protective Antigen]]''', Jing Huang




[http://www.chem.umass.edu/people/kaltashovlab/ Kaltashov Lab]
[http://www.chem.umass.edu/people/kaltashovlab/ Kaltashov Lab]
 
: **'''[[Molecular Playground/Hemoglobin-Haptoglobin Complex]]''', Ololade Fatunmbi, Chibueze Egeruoh '''***New Fall 2014***'''
: '''[http://proteopedia.org/wiki/index.php/Chengfeng_Ren Molecular Playground/Inteferon]''', Chengfeng Ren
: '''[http://proteopedia.org/wiki/index.php/Chengfeng_Ren Molecular Playground/Inteferon]'''[Revised], Chengfeng Ren
: ''' [[Molecular Playground/Transferrin]]''', Khaja Muneeruddin, Jake Pawlowski
: ''' [[Molecular Playground/Transferrin]]''', Khaja Muneeruddin, Jake Pawlowski
: '''[[Molecular Playground/Velaglucerase]]''', Adriana Kita
: '''[[Molecular Playground/Velaglucerase]]''', Adriana Kita
Line 90: Line 76:




Knapp lab
[http://people.chem.umass.edu/knapplab/?q=knappchem/index.html/ Knapp Lab]
 
: '''[[Molecular Playground/Prolyl Hydroxylase Domain (PHD) Enzyme]]''', Cristina Martin, Serap Pektas '''Best CBI Molecule Proteopedia Page 2010''' '''***New Fall 2014***'''
: '''[[Molecular Playground/FIH]]''', Vanessa Chaplin, Cornelius Taabazuing, Breanne Holmes, John Hangasky
: '''[[Molecular Playground/FIH]]''', Vanessa Chaplin, Cornelius Taabazuing, Breanne Holmes, John Hangasky
: '''[[Molecular Playground/Prolyl Hydroxylase Domain (PHD) Enzyme]]''', Cristina Martin, Serap Pektas '''Best CBI Molecule Proteopedia Page 2010'''
[http://people.chem.umass.edu/mmaroney/ Maroney Lab]
: '''[[Molecular Playground/Nickel Superoxide Dismutase]]''', Carolyn Carr
: '''[[Molecular Playground/CsoR and RcnR]]''', Heidi Hu, Carolyn Carr
: '''[[Molecular Playground/HypA]]''', Heidi Hu




Line 112: Line 89:


[http://www.peytonlab.org/ Peyton Lab]
[http://www.peytonlab.org/ Peyton Lab]
: '''[[Molecular Playground/IntegrinBeta1]]''', Lauren Jansen, Lauren Barney, Elizabeth Brooks, Alyssa Schwartz
: '''[[Molecular Playground/IntegrinBeta1]]''', Lauren Jansen, Lauren Barney, Elizabeth Brooks, Alyssa Schwartz ***'''NEW FALL 2014''''***
: '''[[Molecular Playground/MMP14]]''', Lauren Jansen
: '''[[Molecular Playground/MMP14]]''', Lauren Jansen
: '''[[Molecular Playground/C-Raf]]''', Thuy Nguyen
: '''[[Molecular Playground/C-Raf]]''', Thuy Nguyen
: '''[[Molecular Playground/FAK]]''', Dannielle Ryman
: '''[[Molecular Playground/FAK]]''', Dannielle Ryman
[http://roberts.openwetware.org/ Roberts Lab]
: '''[[Molecular Playground/Taxol]]''',  Rohan Patil, Sarah Wilson
: '''[[Molecular Playground/Insulin]]''', Whitney Stoppel




Line 133: Line 105:
[http://http://www.umass.edu/schiffman/  Schiffman Lab]
[http://http://www.umass.edu/schiffman/  Schiffman Lab]
: '''[[Molecular Playground/Streptavidin]]''', Katrina Rieger
: '''[[Molecular Playground/Streptavidin]]''', Katrina Rieger
[http://www.biochem.umass.edu/faculty/danny-j-schnell Schnell Lab]
: '''[[Molecular Playground/Tic40]]''', Mine Canakci


Tew Lab
Tew Lab


: '''[[Molecular Playground/HIV Tat]]''', Brittany deRonde
: '''[[Molecular Playground/HIV Tat]]''', Brittany deRonde, Coralie Backlund




Line 151: Line 118:
: '''[[User:Rami Rajasekhar Reddy|Molecular Playground/Avidin]]''', Rami Rajasekar Reddy
: '''[[User:Rami Rajasekhar Reddy|Molecular Playground/Avidin]]''', Rami Rajasekar Reddy
: '''[[Molecular Playground/Biotin binding avidin]]''', Diego Amado  
: '''[[Molecular Playground/Biotin binding avidin]]''', Diego Amado  
: '''[[User:Jiaming Zhuang|Molecular Playground/MMP12]]''', Jiaming Zhuang
: ''' [[User:Jing Guo|Molecular Playground/Gluconase]]''', Jing Guo
: ''' [[User:Jing Guo|Molecular Playground/Gluconase]]''', Jing Guo
: '''[[Molecular Playground/Glutathione Reductase]]''', Reuben Chacko
: '''[[Molecular Playground/Glutathione Reductase]]''', Reuben Chacko
 
: '''[[Molecular Playground/MMP9]]''', Jiaming Zhuang, Mallory Gordon '''Revised 2014'''


Thayumanavan & Vachet Labs
Thayumanavan & Vachet Labs
Line 163: Line 129:
[http://people.chem.umass.edu/thompson/index.html Thompson Lab]
[http://people.chem.umass.edu/thompson/index.html Thompson Lab]


: '''[[Molecular Playground/Bacterial Chemotaxis Complex]]''', Elizabeth R. Haglin, Maryam Kashefi
: '''[[Molecular Playground/Bacterial Chemotaxis Complex]]''', Elizabeth R. Haglin, Maryam Kashefi '''"Revised 2014"'''
: '''[[Molecular Playground/CheA]]''', Elizabeth R. Haglin
: '''[[Molecular Playground/CheA]]''', Elizabeth R. Haglin
: '''[[Molecular Playground/Bacterial Chemotaxis Receptors]]''', Lynmarie K. Thompson, Shiela M. Jones
: '''[[Molecular Playground/Bacterial Chemotaxis Receptors]]''', Lynmarie K. Thompson, Shiela M. Jones
Line 171: Line 137:
[http://www.chem.umass.edu/~vachet/index.html Vachet Lab]
[http://www.chem.umass.edu/~vachet/index.html Vachet Lab]


: ''[[Molecular Playground/Human Serum Albumin]]''', Mahalia Serrano
: **'''[[Molecular Playground/Human Serum Albumin]]''', Mahalia Serrano ''*Revised 2014*''
: '''[[Molecular playground/beta 2 microglobulin]]''',  Nick Borotto '''Best CBI Molecule Jmol scenes 2010'''
: '''[[Molecular playground/beta 2 microglobulin]]''',  Nick Borotto, Tyler Marcinko  ***'''Revised Fall 2014'''*** '''Best CBI Molecule Jmol scenes 2010'''
: '''[[Molecular Playground/Myoglobin]]''',  Yuping Zhou  
: '''[[Molecular Playground/Myoglobin]]''',  Yuping Zhou  
:'''[[Molecular Playground/ Copper-Zinc Superoxide Dismutase]]''', Shaynah Browne
:'''[[Molecular Playground/ Copper-Zinc Superoxide Dismutase]]''', Shaynah Browne
: '''[[Molecular Playground/Ubiquitin salt bridge discussion]]''', Zhe Zhang
: '''[[Molecular Playground/Ubiquitin salt bridge discussion]]''', Zhe Zhang
Vierling Lab
: '''[[Molecular Playground/sHSP]]''', Keith Ballard '''New 2014'''




Line 182: Line 152:
: '''[[Molecular Playground/PcrA Helicase]]''', Luis E Ramirez-Tapia, [http://www.chem.umass.edu/~cmartin/ Martin Lab]
: '''[[Molecular Playground/PcrA Helicase]]''', Luis E Ramirez-Tapia, [http://www.chem.umass.edu/~cmartin/ Martin Lab]


Other Laboratories
: '''[[Molecular Playground/UreE]]''', Priyanka Basak, '''New 2014''', Maroney Lab
: '''[[Molecular Playground/Nickel Superoxide Dismutase]]''', Carolyn Carr, Maroney Lab
: '''[[Molecular Playground/CsoR and RcnR]]''', Heidi Hu, Carolyn Carr, Hsin-Ting (Tiffany )Huang, '''Revised 2014''', Maroney Lab
: '''[[Molecular Playground/HypA]]''', Heidi Hu, Maroney Lab


Other Laboratories
: '''[[Molecular Playground/Glutamate Receptor]]''',  Amanda Hussey, Steve McCarron, Rosie Combs-Bachmann, Mariel Feliciano, Chambers Lab


:'''[[Molecular Playground/4'-PHOSPHOPANTETHEINYL TRANSFERASE (Sfp)]]''', Jon Amoroso, Gitanjeli Prasad, Lawrence Sheringham Borketey, Schnarr lab
:'''[[Molecular Playground/4'-PHOSPHOPANTETHEINYL TRANSFERASE (Sfp)]]''', Jon Amoroso, Gitanjeli Prasad, Lawrence Sheringham Borketey, Schnarr lab
: '''[[6-deoxyerythronolide_B_synthase_(DEBS)|Molecular Playground/6-Deoxyerythronolide B Synthase]]''', Tsung-Yi Lin, Jon Amoroso, Lawrence Sheringham Borketey, Schnarr lab
: '''[[6-deoxyerythronolide_B_synthase_(DEBS)|Molecular Playground/6-Deoxyerythronolide B Synthase]]''', Tsung-Yi Lin, Jon Amoroso, Lawrence Sheringham Borketey, Schnarr lab
: '''[[Molecular Playground/ACP apo]]''', Gitanjeli Prasad,  Schnarr lab
: '''[[Molecular Playground/ACP apo]]''', Gitanjeli Prasad,  Schnarr lab
: '''[[Molecular Playground/CheR]]''',  Miaomin Zhang, Forbes Lab
: '''[[Molecular Playground/RBP]]''',  Jan Panteli, Forbes Lab
: '''[[Molecular Playground/TRAIL]]''',  Charley Swofford, Forbes Lab


: '''[[Molecular Playground/cytoplasmic domain of a serine chemotaxis receptor]]''',  Meili Yang, Weis lab
: '''[[Molecular Playground/cytoplasmic domain of a serine chemotaxis receptor]]''',  Meili Yang, Weis lab
: '''[[Molecular Playground/Taxol]]''',  Elizabeth Cummings, Rohan Patil, Sarah Wilson ***'''Revised Fall 2014'''***, Roberts Lab
: '''[[Molecular Playground/Insulin]]''', Whitney Stoppel, Roberts Lab


: '''[[Molecular Playground/Alginate-Fall2011]]''', Joe White, David Griffi, Bhatia Lab
: '''[[Molecular Playground/Alginate-Fall2011]]''', Joe White, David Griffi, Bhatia Lab
: '''[[Molecular Playground/Poly(ethylene glycol)]]''', Erika M. Saffer, Bhatia Lab
: '''[[Molecular Playground/Poly(ethylene glycol)]]''', Erika M. Saffer, Bhatia Lab
: '''[[Molecular Playground/Tic40]]''', Mine Canakci, Schnell Lab
: '''[[Molecular Playground/Protective Antigen]]''',  Jing Huang, Holden Lab


: '''[[Molecular Playground/YKL-40]]''', Ralph A. Francescone III, [http://www.bio.umass.edu/mcb/faculty/Shao.html Shao Lab]
: '''[[Molecular Playground/YKL-40]]''', Ralph A. Francescone III, [http://www.bio.umass.edu/mcb/faculty/Shao.html Shao Lab]

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Lynmarie K Thompson, Tsung-Yi Lin, Daniella C. Gonzalez-Toro, Judy Ventura, Daniel Moyano-Marino, Charles Swofford, Rohan Patil, Yadilette Rivera-Colon, Ralph A. Francescone III, Krishna Reddy Ragupathi, Rami Rajasekhar Reddy, Johan Sunryd, Whitney Stoppel, Ankit Vahia, Nilima Kolli, David Griffin, Mariel Feliciano, Diego Amado-Torres, John Hangasky, Jiaming Zhuang, Rui Tang, Gladys Wanjiku Murage, Nick Borotto, Jing Guo, Bradley Duncan, Kristine Faye Pobre, Cristina B. Martin, Mangai Periasamy, Reuben Chacko, Adriana Kita, Daniel Seeman, Kristen Huber, Samantha B. Nicholls, David Solfiell, Luis E Ramirez-Tapia, Shiela M. Jones, Yuping Zhou, Sarah Wilson, Gitanjeli Prasad, Genevieve Abbruzzese, Meili Yang, Joanne Lau, Muslum Yildiz, Joe White, Shaynah Browne, Miaomin Zhang, Erika M. Saffer, Jan Panteli, Abla Tannous, Eric Martz, Jaime Prilusky, Ketan Mathavan, Karan Hingorani, Khaja Muneeruddin, Xuni Li, Thuy V. Nguyen, Brittany deRonde, Dannielle Ryman, Heidi Hu, Kevin Buadlart Dagbay, Gustavo Elberto Epalza Sanchez, Jing Liu, Carolyn Carr, Serap Pektas, Carrie Morrison Penland, Lawrence Sheringham Borketey, Lydia Lamriben, Jake Pawlowski, Banyuhay P. Serrano, Elizabeth R. Haglin, Jing Huang, Christina Chisholm, Mine Canakci, Zhe Zhang, Carolina Morell-Perez, Lauren Jansen, Katrina Rieger, Kamal K. Joshi, Derek MacPherson, Vanessa Chaplin, Bib Yang, Chengfeng Ren, Huan He, Mahalia Serrano, Maryam Kashefy, Yunlong Zhao, Joseph Tilitsky, Priyanka Basak, Hsin-Ting Huang, Joseph Hardie, Yuzhou Tang, Robert Vass, Elizabeth Cummings, Tyler Marcinko, Coralie Backlund, Jill Graham, Keith Ballard, Ololade Fatunmbi, Mallory Gordon