CBI Molecules: Difference between revisions

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Lynmarie K Thompson, Tsung-Yi Lin, Daniella C. Gonzalez-Toro, Judy Ventura, Daniel Moyano-Marino, Charles Swofford, Rohan Patil, Yadilette Rivera-Colon, Ralph A. Francescone III, Krishna Reddy Ragupathi, Rami Rajasekhar Reddy, Johan Sunryd, Whitney Stoppel, Ankit Vahia, Nilima Kolli, David Griffin, Mariel Feliciano, Diego Amado-Torres, John Hangasky, Jiaming Zhuang, Rui Tang, Gladys Wanjiku Murage, Nick Borotto, Jing Guo, Bradley Duncan, Kristine Faye Pobre, Cristina B. Martin, Mangai Periasamy, Reuben Chacko, Adriana Kita, Daniel Seeman, Kristen Huber, Samantha B. Nicholls, David Solfiell, Luis E Ramirez-Tapia, Shiela M. Jones, Yuping Zhou, Sarah Wilson, Gitanjeli Prasad, Genevieve Abbruzzese, Meili Yang, Joanne Lau, Muslum Yildiz, Joe White, Shaynah Browne, Miaomin Zhang, Erika M. Saffer, Jan Panteli, Abla Tannous, Eric Martz, Jaime Prilusky, Ketan Mathavan, Karan Hingorani, Khaja Muneeruddin, Xuni Li, Thuy V. Nguyen, Brittany deRonde, Dannielle Ryman, Heidi Hu, Kevin Buadlart Dagbay, Gustavo Elberto Epalza Sanchez, Jing Liu, Carolyn Carr, Serap Pektas, Carrie Morrison Penland, Lawrence Sheringham Borketey, Lydia Lamriben, Jake Pawlowski, Banyuhay P. Serrano, Elizabeth R. Haglin, Jing Huang, Christina Chisholm, Mine Canakci, Zhe Zhang, Carolina Morell-Perez, Lauren Jansen, Katrina Rieger, Kamal K. Joshi, Derek MacPherson, Vanessa Chaplin, Bib Yang, Chengfeng Ren, Huan He, Mahalia Serrano, Maryam Kashefy, Yunlong Zhao, Joseph Tilitsky, Priyanka Basak, Hsin-Ting Huang, Joseph Hardie, Yuzhou Tang, Robert Vass, Elizabeth Cummings, Tyler Marcinko, Coralie Backlund, Jill Graham, Keith Ballard, Ololade Fatunmbi, Mallory Gordon

@@ Line 9: / Line 9: @@
 ==Molecules==
-'''** Designates CBI Molecules Featured on [http://http://www.umass.edu/cbi/ CBI website]'''
+'''** Designates CBI Molecules Featured on [http://www.umass.edu/cbi/ CBI website]'''
-[http://chamberslab.com/wp/ Chambers Lab]
-: '''[[Molecular Playground/Glutamate Receptor]]''',  Amanda Hussey, Steve McCarron, Rosie Combs-Bachmann, Mariel Feliciano
 [http://www.chem.umass.edu/~chenlab/index.HTML Chen Lab]
-: '''[[Molecular Playground/ClyA]]''', Bib Yang
+: '''[[Molecular Playground/ClyA]]''', Monifa Fahie, Bib Yang '''Revised 2014'''
-: '''[[Molecular Playground/OmpG]]''', Christina Chisholm
+: '''[[Molecular Playground/OmpG]]''', Christina Chisholm, Monifa Fahie, Bib Yang '''Revised 2014'''
 [http://openwetware.org/wiki/Chien Chien Lab]
+: '''[[Molecular Playground/ClpP]]''', Lisa Hernandez, Rob Vass '''New 2014'''
 : '''[[Molecular Playground/Homo-dimeric RcdA]]''', Kamal K. Joshi
 : **'''[[Molecular Playground/Hexameric ClpX]]''', Joanne Lau '''Best CBI Molecule 2011'''
@@ Line 30: / Line 26: @@
 Farkas Lab
+: '''[[Molecular Playground/CLOCK:BMAL1 heterodimer complex]]''', Hui-Hsien Lin, Joseph Hardie, Michael Mingroni '''New 2014'''
-Forbes Lab
-: '''[[Molecular Playground/CheR]]''',  Miaomin Zhang
-: '''[[Molecular Playground/RBP]]''',  Jan Panteli
-: '''[[Molecular Playground/TRAIL]]''',  Charley Swofford
@@ Line 47: / Line 37: @@
 [http://people.chem.umass.edu/gieraschlab/ Gierasch Lab]
+: '''[[Molecular_Playground/DnaK]]''', Joseph Tilitsky, New 2014
 : '''[[CRABP I ( Cellular Retinoic Acid Binding Protein )|Molecular Playground/CRABP I]]''', Kristine Faye Pobre, Mylene Ferrolino,Mangai Periasamy  '''Best Overall CBI Molecule 2010'''
 : '''[[Molecular Playground/CRABP I (Cellular Retinoic Acid Binding Protein)]]''', Gustavo Elberto Epalza Sanchez
@@ Line 55: / Line 46: @@
 : '''[[Molecular Playground/Executioner Caspase-7]]''', Derek MacPherson, Maureen E. Hill
-: '''[[Molecular Playground/[[Caspase-3 Regulatory Mechanisms]]''', Scott Eron, Bay Serrano, Yunlong Zhao
+: '''[[Molecular Playground/Caspase-3 Regulatory Mechanisms]]''', Scott Eron, Bay Serrano, Yunlong Zhao
-: ''' [[Molecular Playground/Caspase-6 and neurodegeneration]]''', Kevin Buadlart Dagbay
+: '''[[Molecular Playground/Caspase-6 and neurodegeneration]]''', Kevin Buadlart Dagbay
 : '''[[Molecular Playground/Caspase-7 Dynamics]]'''
 : '''[[Molecular Playground/Caspase-9 Regulation]]''', Kristen Huber
@@ Line 66: / Line 57: @@
 Hebert Lab
-: '''[[Molecular_Playground/Hsp70-Hsp90]]''',  Jill Graham
+: '''[[Molecular_Playground/Hsp70-Hsp90]]''',  Jill Graham "Revised 2014"
 : '''[[Molecular_Playground/ERDj5]]''',  Lydia Lamriben
 : '''[[Molecular Playground/Saposin C]]''', Abla Tannous
@@ Line 74: / Line 65: @@
 [http://people.biochem.umass.edu/aheuck/aph.html Heuck Lab]
-: '''[[Molecular_Playground/Pcr H]]''',  Fabian Romano, Carolina Morell-Pérez
+: '''[[Molecular_Playground/Pcr H]]''',  Fabian Romano, Carolina Morell-Pérez, Yuzhou Tang
-[http://people.chem.umass.edu/mholden/ Holden Lab]
-: '''[[Molecular Playground/Protective Antigen]]''',  Jing Huang
 [http://www.chem.umass.edu/people/kaltashovlab/ Kaltashov Lab]
+: **'''[[Molecular Playground/Hemoglobin-Haptoglobin Complex]]''', Ololade Fatunmbi, Chibueze Egeruoh '''***New Fall 2014***'''
-: '''[http://proteopedia.org/wiki/index.php/Chengfeng_Ren Molecular Playground/Inteferon]''', Chengfeng Ren
+: '''[http://proteopedia.org/wiki/index.php/Chengfeng_Ren Molecular Playground/Inteferon]'''[Revised], Chengfeng Ren
 : ''' [[Molecular Playground/Transferrin]]''', Khaja Muneeruddin, Jake Pawlowski
 : '''[[Molecular Playground/Velaglucerase]]''', Adriana Kita
@@ Line 90: / Line 76: @@
-Knapp lab
+[http://people.chem.umass.edu/knapplab/?q=knappchem/index.html/ Knapp Lab]
+: '''[[Molecular Playground/Prolyl Hydroxylase Domain (PHD) Enzyme]]''', Cristina Martin, Serap Pektas '''Best CBI Molecule Proteopedia Page 2010''' '''***New Fall 2014***'''
 : '''[[Molecular Playground/FIH]]''', Vanessa Chaplin, Cornelius Taabazuing, Breanne Holmes, John Hangasky
-: '''[[Molecular Playground/Prolyl Hydroxylase Domain (PHD) Enzyme]]''', Cristina Martin, Serap Pektas '''Best CBI Molecule Proteopedia Page 2010'''
-[http://people.chem.umass.edu/mmaroney/ Maroney Lab]
-: '''[[Molecular Playground/Nickel Superoxide Dismutase]]''', Carolyn Carr
-: '''[[Molecular Playground/CsoR and RcnR]]''', Heidi Hu, Carolyn Carr
-: '''[[Molecular Playground/HypA]]''', Heidi Hu
@@ Line 112: / Line 89: @@
 [http://www.peytonlab.org/ Peyton Lab]
+: '''[[Molecular Playground/IntegrinBeta1]]''', Lauren Jansen, Lauren Barney, Elizabeth Brooks, Alyssa Schwartz ***'''NEW FALL 2014''''***
 : '''[[Molecular Playground/MMP14]]''', Lauren Jansen
 : '''[[Molecular Playground/C-Raf]]''', Thuy Nguyen
 : '''[[Molecular Playground/FAK]]''', Dannielle Ryman
-[http://roberts.openwetware.org/ Roberts Lab]
-: '''[[Molecular Playground/Taxol]]''',  Rohan Patil, Sarah Wilson
-: '''[[Molecular Playground/Insulin]]''', Whitney Stoppel
@@ Line 132: / Line 105: @@
 [http://http://www.umass.edu/schiffman/  Schiffman Lab]
 : '''[[Molecular Playground/Streptavidin]]''', Katrina Rieger
-[http://www.biochem.umass.edu/faculty/danny-j-schnell Schnell Lab]
-: '''[[Molecular Playground/Tic40]]''', Mine Canakci
 Tew Lab
-: '''[[Molecular Playground/HIV Tat]]''', Brittany deRonde
+: '''[[Molecular Playground/HIV Tat]]''', Brittany deRonde, Coralie Backlund
@@ Line 150: / Line 118: @@
 : '''[[User:Rami Rajasekhar Reddy|Molecular Playground/Avidin]]''', Rami Rajasekar Reddy
 : '''[[Molecular Playground/Biotin binding avidin]]''', Diego Amado
-: '''[[User:Jiaming Zhuang|Molecular Playground/MMP12]]''', Jiaming Zhuang
 : ''' [[User:Jing Guo|Molecular Playground/Gluconase]]''', Jing Guo
 : '''[[Molecular Playground/Glutathione Reductase]]''', Reuben Chacko
+: '''[[Molecular Playground/MMP9]]''', Jiaming Zhuang, Mallory Gordon '''Revised 2014'''
 Thayumanavan & Vachet Labs
@@ Line 162: / Line 129: @@
 [http://people.chem.umass.edu/thompson/index.html Thompson Lab]
-: '''[[Molecular Playground/Bacterial Chemotaxis Complex]]''', Elizabeth R. Haglin, Maryam Kashefi
+: '''[[Molecular Playground/Bacterial Chemotaxis Complex]]''', Elizabeth R. Haglin, Maryam Kashefi '''"Revised 2014"'''
 : '''[[Molecular Playground/CheA]]''', Elizabeth R. Haglin
 : '''[[Molecular Playground/Bacterial Chemotaxis Receptors]]''', Lynmarie K. Thompson, Shiela M. Jones
@@ Line 170: / Line 137: @@
 [http://www.chem.umass.edu/~vachet/index.html Vachet Lab]
-: ''[[Molecular Playground/Human Serum Albumin]]''', Mahalia Serrano
+: **'''[[Molecular Playground/Human Serum Albumin]]''', Mahalia Serrano ''*Revised 2014*''
-: '''[[Molecular playground/beta 2 microglobulin]]''',  Nick Borotto '''Best CBI Molecule Jmol scenes 2010'''
+: '''[[Molecular playground/beta 2 microglobulin]]''',  Nick Borotto, Tyler Marcinko  ***'''Revised Fall 2014'''*** '''Best CBI Molecule Jmol scenes 2010'''
 : '''[[Molecular Playground/Myoglobin]]''',  Yuping Zhou
 :'''[[Molecular Playground/ Copper-Zinc Superoxide Dismutase]]''', Shaynah Browne
 : '''[[Molecular Playground/Ubiquitin salt bridge discussion]]''', Zhe Zhang
+Vierling Lab
+: '''[[Molecular Playground/sHSP]]''', Keith Ballard '''New 2014'''
@@ Line 181: / Line 152: @@
 : '''[[Molecular Playground/PcrA Helicase]]''', Luis E Ramirez-Tapia, [http://www.chem.umass.edu/~cmartin/ Martin Lab]
+Other Laboratories
-Other Laboratories
+: '''[[Molecular Playground/UreE]]''', Priyanka Basak, '''New 2014''', Maroney Lab
+: '''[[Molecular Playground/Nickel Superoxide Dismutase]]''', Carolyn Carr, Maroney Lab
+: '''[[Molecular Playground/CsoR and RcnR]]''', Heidi Hu, Carolyn Carr, Hsin-Ting (Tiffany )Huang, '''Revised 2014''', Maroney Lab
+: '''[[Molecular Playground/HypA]]''', Heidi Hu, Maroney Lab
+: '''[[Molecular Playground/Glutamate Receptor]]''',  Amanda Hussey, Steve McCarron, Rosie Combs-Bachmann, Mariel Feliciano, Chambers Lab
 :'''[[Molecular Playground/4'-PHOSPHOPANTETHEINYL TRANSFERASE (Sfp)]]''', Jon Amoroso, Gitanjeli Prasad, Lawrence Sheringham Borketey, Schnarr lab
 : '''[[6-deoxyerythronolide_B_synthase_(DEBS)|Molecular Playground/6-Deoxyerythronolide B Synthase]]''', Tsung-Yi Lin, Jon Amoroso, Lawrence Sheringham Borketey, Schnarr lab
 : '''[[Molecular Playground/ACP apo]]''', Gitanjeli Prasad,  Schnarr lab
+: '''[[Molecular Playground/CheR]]''',  Miaomin Zhang, Forbes Lab
+: '''[[Molecular Playground/RBP]]''',  Jan Panteli, Forbes Lab
+: '''[[Molecular Playground/TRAIL]]''',  Charley Swofford, Forbes Lab
 : '''[[Molecular Playground/cytoplasmic domain of a serine chemotaxis receptor]]''',  Meili Yang, Weis lab
+: '''[[Molecular Playground/Taxol]]''',  Elizabeth Cummings, Rohan Patil, Sarah Wilson ***'''Revised Fall 2014'''***, Roberts Lab
+: '''[[Molecular Playground/Insulin]]''', Whitney Stoppel, Roberts Lab
 : '''[[Molecular Playground/Alginate-Fall2011]]''', Joe White, David Griffi, Bhatia Lab
 : '''[[Molecular Playground/Poly(ethylene glycol)]]''', Erika M. Saffer, Bhatia Lab
+: '''[[Molecular Playground/Tic40]]''', Mine Canakci, Schnell Lab
+: '''[[Molecular Playground/Protective Antigen]]''',  Jing Huang, Holden Lab
 : '''[[Molecular Playground/YKL-40]]''', Ralph A. Francescone III, [http://www.bio.umass.edu/mcb/faculty/Shao.html Shao Lab]
@@ Line 215: / Line 203: @@
 '''Complete the above steps before the CBI Molecule Workshop.'''
-. For those editing an existing CBI Molecule, start from that entry so that it retains the full author list of all authors that contributed. You are encouraged to collaborate on the CBI Molecules, but everyone will need to log in as themself and create a green scene to get credit for their work and to appear as authors on the final list. If you are the sole student from your group enrolled in Chalk Talk and have not previously made a CBI Molecule, try to convince another group member who has previously made a CBI Molecule (see  list above) to join us for the workshop so that you can work together.
+. When editing an existing CBI Molecule, leave the original intact and make a copy that you will edit so that it retains the full author list of all authors that contributed. You are encouraged to collaborate on the CBI Molecules, but everyone will need to log in as themself and create a green scene to get credit for their work and to appear as authors on the final list. If you are the sole student from your group enrolled in Chalk Talk and have not previously made a CBI Molecule, try to convince another group member who has previously made a CBI Molecule (see  list above) to join us for the workshop so that you can work together.
+. Your final pages should be called "Molecular Playground/your molecule" and should have links on this CBI Molecule page -- put the new ones first on the list from your research group. Label them "in progress" until you are finished, and then "new 2014" or "revised 2014". Minimize text; tell your story with green scenes!
-. Your final pages should be called "Molecular Playground/your molecule" and should have links on this CBI Molecule page -- put the new ones first on the list from your research group. Label them "in progress" until you are finished, and then "new 2014" or "revised 2014".
+. When your CBI Molecule is complete, send Lynmarie an email to nominate a cool scene/clever caption you would like to feature at the Molecular Playground (include a link to your CBI Molecule, name of the green scene, and caption).
 ==Links to HELP pages==