CBI Molecules: Difference between revisions

Fall 2013: CBI Molecules are due 12/4/13 and should be added at the TOP of the list from your lab. Label it as "in progress" until you are finished, and then as "New 2013" or "Revised 2013". For those editing an existing CBI Molecule, start from that entry so that it retains the full author list of all authors that contributed (or include credits to the original page and authors if it does not).

'''** Designates CBI Molecules Featured on [http://http://www.umass.edu/cbi/ CBI website]'''

 

 

 

: '''[[Molecular Playground/ClyA]]''', Bib Yang

: '''[[Molecular Playground/OmpG]]''', Christina Chisholm

 

 

 

: '''[[Molecular Playground/CheR]]''', Miaomin Zhang

: '''[[Molecular Playground/RBP]]''', Jan Panteli

: '''[[Molecular Playground/TRAIL]]''',  Charley Swofford

: '''[[CRABP I ( Cellular Retinoic Acid Binding Protein )|Molecular Playground/CRABP I]]''', Kristine Faye Pobre, Mylene Ferrolino,Mangai Periasamy

:: Best Overall CBI Molecule 2010

: **'''[[Molecular_Playground/DHFR]]''', Karan Hingorani  

:: Best CBI Molecule 2012

: New Fall 2013!! '''[[Molecular Playground/Executioner Caspase-7]]''', Derek MacPherson, Maureen E. Hill

: '''[[Molecular Playground/[[Caspase-3 Regulatory Mechanisms]]''', Scott Eron, Bay Serrano, Yunlong Zhao

: ''' [[Molecular Playground/Caspase-6 and neurodegeneration]]''', Kevin Buadlart Dagbay

: New Fall 2013!! '''[[Molecular_Playground/Hsp70-Hsp90]]''',  Jill Graham

: New Fall 2012!! '''[[Molecular_Playground/ERDj5]]''',  Lydia Lamriben

: Updated Fall 2012!! '''[[Molecular_Playground/Pcr H]]''',  Fabian Romano, Carolina Morell-Pérez

 

 

 

: New Fall 2012!! '''[[Molecular Playground/Protective Antigen]]''', Jing Huang

 

: New 2013! '''[http://proteopedia.org/wiki/index.php/Chengfeng_Ren Molecular Playground/Inteferon]''', Chengfeng Ren

: Updated Fall 2012!! ''' [[Molecular Playground/Transferrin]]''', Khaja Muneeruddin, Jake Pawlowski

: New Summer 2014!! '''[[Molecular Playground/Antithrombin-Heparin]]''', Yunlong Zhao

 

 

 

 

: '''[[Molecular Playground/Nickel Superoxide Dismutase]]''', Carolyn Carr

: Updated Fall 2013!!  '''[[Molecular Playground/CsoR and RcnR]]''', Heidi Hu, Carolyn Carr

: '''[[Molecular Playground/HypA]]''', Heidi Hu

: **'''[[Molecular Playground/T7 RNAP Conformations]]''', Luis E. Ramirez-Tapia  

:: Best CBI Molecule 2011

: New Fall 2013! '''[[Molecular Playground/MMP14]]''', Lauren Jansen

:New Fall 2013! '''[[Molecular Playground/Streptavidin]]''', Katrina Rieger

 

 

 

: Updated Fall 2013!!  '''[[Molecular Playground/HIV Tat]]''', Brittany deRonde

: New Fall 2013!! '''[[Interleukin-1 beta]]''', Huan He

 

: New Fall 2013!! '''[[Molecular Playground/Bacterial Chemotaxis Complex]]''', Elizabeth R. Haglin, Maryam Kashefi

: New Fall 2012!! '''[[Molecular Playground/CheA]]''', Elizabeth R. Haglin

: Updated 2013!! '''[[Molecular Playground/Cytoplasmic domain of chemoreceptor of Thermotoga maritima]]''',  Xuni Li

: New Fall 2013!! '''[[Molecular Playground/Human Serum Albumin]]''', Mahalia Serrano

: '''[[Molecular playground/beta 2 microglobulin]]''',  Nick Borotto

:: Best CBI Molecule Jmol scenes 2010

Fall 2013: Complete steps 1-2 by 10/18, and bring your computer to the CBI Molecule Workshop on Wed 10/23 in ISB 321.  

A successful CBI Molecule will be an interesting, nontechnical description of a molecule related to your group's research. It should not be super long, but instead have multiple green scenes. Green scenes should clearly show an interesting feature and should be attractive. Use the green scenes to help you make interesting points about the molecule (do not try to describe every feature of the molecule). It's great if you can end with a brief statement about how it relates to your group's research goals.

2. Read through the rest of the instructions and look at any existing CBI Molecules from your research group. Talk with other Chalk Talk students in your research group and think about how you can make a new or improved CBI Molecule related to your group's research. Develop ideas for the scenes you wish to show. You will work learn how to make scenes during the workshop.  

3. Get started working in Proteopedia by using the links at [[Help:Contents]]. Make yourself a sandbox page: Enter "User:Your Name/Sandbox 1" (omit quotes) in the search box, then follow instructions to edit this page. Practice entering text, inserting a structure window with scrolling text (green 4-square button on the right), and creating a green scene. You can look at other Proteopedia pages in edit mode to see how different effects (like colored text) are achieved (but this won't show you how the scene effects are made).  

4. For those editing an existing CBI Molecule, start from that entry so that it retains the full author list of all authors that contributed. You are encouraged to collaborate on the CBI Molecules, but everyone will need to do some editing of the molecule so that they each appear as authors on the final list. If you are the sole student from your group enrolled in Chalk Talk and have not previously made a CBI Molecule, try to convince another group member who has previously made a CBI Molecule (see  list above) to join us for the workshop so that you can work together.

5. Your final pages should be called "Molecular Playground/your molecule" and should have links on this CBI Molecule page -- put the new ones first on the list from your research group. Label them "in progress" until you are finished, and then "new 2013" or "revised 2013".