Glycerol-3-Phosphate Dehydrogenase: Difference between revisions

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===Structure===
===Structure===


[[Image:FINAL.png|thumb|Glycerol 3-Phosphate Dehydrogenase]]
[[Image:FINAL.png|left|thumb|Glycerol 3-Phosphate Dehydrogenase]]
{{Clear}}
{{Clear}}
GlpD is a dimer that consists of two subunits; α and β. The GlpD structure also contains seven ligands; 1,3-Dihydroxyacetonephosphate (13P), β-Octylglucoside (βOG), 1,2-Ethanediol (EDO), Flavin-Adenine Dinucleotide (FAD), Imidazole (IMD), PO4 (Phosphate Ion) and N-(Tris(Hydroxymethyl)methyl)-3-Aminopropanesulfonic Acid (T3A). The active sites on GlpD are the Cap-Domain, FAD- Domain and a ubiquinone substrate analogue, menadione (MD).
GlpD is a dimer that consists of two subunits; α and β. The GlpD structure also contains seven ligands; 1,3-Dihydroxyacetonephosphate (13P), β-Octylglucoside (βOG), 1,2-Ethanediol (EDO), Flavin-Adenine Dinucleotide (FAD), Imidazole (IMD), PO4 (Phosphate Ion) and N-(Tris(Hydroxymethyl)methyl)-3-Aminopropanesulfonic Acid (T3A). The active sites on GlpD are the Cap-Domain, FAD- Domain and a ubiquinone substrate analogue, menadione (MD).
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===Function===
===Function===


GlpD functions in the intracellular membrane of E. coli and in the inner-mitochondrial membrane of eukaryotes. In E. Coli, GlpD catalyzes and reduces the reaction of dihydroxyacetone phosphate to glycerol 3-phosphate in the [http://www.pnas.org/content/105/9/3280/F1.large.jpg glycerol metabolism pathway]. The binding of the substrate analogues (glyceraldehydes 3-phosphate, glyceric acid 2-phosphate and phosphoenolpyruvate, dihydroxyacetone phosphate)or UQ substrate analogues (2-n-heptyl-4-hydroxyquinoline N-oxide and menadione). The conformational change of the structure and resiudes of GlpD catalyzes many different metabolic reactions.
GlpD functions in the intracellular membrane of E. coli and in the inner-mitochondrial membrane of eukaryotes. In E. Coli, GlpD catalyzes and reduces the reaction of dihydroxyacetone phosphate (DHAP) to glycerol 3-phosphate in the [http://www.pnas.org/content/105/9/3280/F1.large.jpg glycerol metabolism pathway]. The binding of the substrate analogues (glyceraldehydes 3-phosphate, glyceric acid 2-phosphate and phosphoenolpyruvate, dihydroxyacetone phosphate) or UQ substrate analogues (2-n-heptyl-4-hydroxyquinoline N-oxide and menadione). The conformational change of the structure and resiudes of GlpD catalyzes many different metabolic reactions.


===Metabolic Pathways===
===Metabolic Pathways===
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====Phosphoplipid Biosynthesis====
====Phosphoplipid Biosynthesis====


GlpD reduces dihydroxyacetone phosphate to glycerol 3-phosphate. Then the glycerol 3-phosphate is catalyzed by acyl transferase to 1-acylglyverol-3-phosphate, and then another acyl transferase catalyzes that to a phosphatidic acid. head groups are added to the phosphatidic acid to synthesize phospholipids.
GlpD reduces DHAP to glycerol 3-phosphate. Then the glycerol 3-phosphate is catalyzed by acyl transferase to 1-acylglyverol-3-phosphate, and then another acyl transferase catalyzes that to a phosphatidic acid. head groups are added to the phosphatidic acid to synthesize phospholipids.


====Glyceroneogenesis====
====Glyceroneogenesis====
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===Diseases===
===Diseases===


GlpD is involved in diseases such as alzeheimer`s, muscle dystrophy, hyaline membrane diseases and many more.  
GlpD is involved in diseases such as Alzeheimer`s, muscle dystrophy, hyaline membrane diseases and many more.  
</StructureSection>
 
==3D structures of glycerol-3-phosphate dehydrogenase==
==3D structures of glycerol-3-phosphate dehydrogenase==
[[Glycerol-3-phosphate dehydrogenase 3D structures]]


Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
</StructureSection>
{{#tree:id=OrganizedByTopic|openlevels=0|
 
*GPDH
 
**[[3da1]] – GPDH + FAD – ''Bacillus halodurans''<br />
**[[2qcu]] - EcGPDH + FAD – ''Escherichia coli''<br />
**[[2r4j]], [[2r4e]] - EcGPDH + FAD + DHAP<br />
**[[2r46]] - EcGPDH + FAD + 2-phosphopyruvic acid<br />
**[[2r45]] - EcGPDH + FAD + 2-phospho-glyceric acid<br />
**[[1yj8]] – GPDH – ''Plasmodium falciparum''
 
*NADPH-dependent GPDH


**[[3k96]] – GPDH – ''Coxiella burnetii''<br />
**[[2pla]], [[1x0x]] – hGPDH + NAD – human<br />
**[[1wpq]] - hGPDH + NAD + DHA<br />
**[[1x0v]] – hGPDH<br />
**[[4fgw]] – GPDH - yeast<br />
**[[1z82]] – GPDH + NADP + G3P + glyceraldehydes-3-phosphate – ''Thermotoga maritima''<br />
**[[1txg]] – GPDH + glycerol – ''Archaeoglobus fulgidus''<br />
**[[1evy]] – GPDH  – ''Leishmania mexicana''<br />
**[[1n1g]], [[1m66]], [[1m67]], [[1jdj]] – LmGPDH + inhibitor<br />
**[[1evz]] - LmGPDH + NAD<br />
**[[1n1e]] – LmGPDH + NAD + DHAP
}}
==References==
==References==
<references />
<references />

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Andrea Gorrell, Indu Toora, Andrew Rebeyka, David Canner, Michal Harel, Jaime Prilusky, Alexander Berchansky