Help:Color Keys: Difference between revisions
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==Examples== | ==Examples== | ||
* Many color keys are used in the article on the [[Lac repressor]]. | |||
* The amino to carboxy color key is used in [[NMR_Ensembles_of_Models#Display_of_NMR_Models_by_Proteopedia]]. | * The amino to carboxy color key is used in [[NMR_Ensembles_of_Models#Display_of_NMR_Models_by_Proteopedia]]. | ||
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{{Template:ColorKey_Element_P}} | {{Template:ColorKey_Element_P}} | ||
{{Template:ColorKey_Element_S}} | {{Template:ColorKey_Element_S}} | ||
{{Template:ColorKey_Element_Se}} | |||
</big></blockquote> | </big></blockquote> | ||
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{{Template:ColorKey_Hydrophobic}}, {{Template:ColorKey_Polar}} | {{Template:ColorKey_Hydrophobic}}, {{Template:ColorKey_Polar}} | ||
</big></blockquote> | </big></blockquote> | ||
In Proteopedia's [[SAT]] is a button ''hydrophobic/polar''. It applies these two colors according to the definitions built into Jmol: | |||
*Hydrophobic: Ala, Cys, Gly, Ile, Leu, Met, Phe, Pro, Trp, Tyr, Val. | |||
*Polar: Arg, Asn, Asp, Gln, Glu, His, Lys, Ser, Thr. | |||
Jmol's categories attempt to categorize the sidechains as to their predominant characteristic. This is an oversimplification as Trp and Tyr have polar atoms; Arg, Gln, Glu, Lys have several aliphatic carbons, and His has an aromatic ring. | |||
===Charge=== | ===Charge=== | ||
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{{Template:ColorKey_N52C3Rainbow}} | {{Template:ColorKey_N52C3Rainbow}} | ||
</blockquote> | </blockquote> | ||
===Temperature Value=== | |||
For an explanation, please see [[Temperature color schemes]]. | |||
*Fixed (Absolute) Temperature | |||
{{Template:ColorKey_TemperatureFixed}} | |||
*Relative Temperature | |||
{{Template:ColorKey_TemperatureRelative}} | |||
The above keys were generated by including the following Template wikitext blocks: | |||
<pre> | |||
{{Template:ColorKey_TemperatureFixed}} | |||
{{Template:ColorKey_TemperatureRelative}} | |||
</pre> | |||
===ConSurf=== | ===ConSurf=== |