User:Jaime Prilusky/Test/Viewer: Difference between revisions

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<SX load='1stp' title='sample structure' size='400' side='right' caption='Caption for this structure' >
<SX load='1stp' size='400' side='right' viewer='molstar' caption='Caption for this structure' >__NOTOC__
==Selection of viewer engine==
The addition of the ''viewer'' parameter to ''&lt;StructureSection'' allows to choose between alternative engines for rendering a structure. Current valid values are '''jmol''' <ref>Jmol: an open-source browser-based HTML5 viewer and stand-alone Java viewer for chemical structures in 3D [http://jmol.org] </ref> (default) and '''molstar''' <ref>Mol* (/'molstar/) is an open collaboration started by PDBe and RCSB PDB to provide a technology stack for data delivery and analysis tools of macromolecules [https://molstar.org/]</ref>.
==Under development==
A few features need additional development to work under different viewers, like &lt;scene>, initialView and SAT. Examples are these links to <scene name="/12/3456/Sample/1">color</scene> by Group, and to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein.
==Help on the tools==
The cheatsheet for using LiteMol viewer, available at [[http://www.ebi.ac.uk/pdbe/litemol PDBe]], should be Ok for the MolStar viewer in use.
==Scrolling page==
Alice was beginning to get very tired of sitting by her sister on the bank, and of having nothing to do: once or twice she had peeped into the book her sister was reading, but it had no pictures or conversations in it, ‘and what is the use of a book,’ thought Alice ‘without pictures or conversations?’
Alice was beginning to get very tired of sitting by her sister on the bank, and of having nothing to do: once or twice she had peeped into the book her sister was reading, but it had no pictures or conversations in it, ‘and what is the use of a book,’ thought Alice ‘without pictures or conversations?’
So she was considering in her own mind (as well as she could, for the hot day made her feel very sleepy and stupid), whether the pleasure of making a daisy-chain would be worth the trouble of getting up and picking the daisies, when suddenly a White Rabbit with pink eyes ran close by her.<ref>Down the Rabbit-Hole. Alice's Adventures in Wonderland, by Lewis Carroll</ref>
 
So she was considering in her own mind (as well as she could, for the hot day made her feel very sleepy and stupid), whether the pleasure of making a daisy-chain would be worth the trouble of getting up and picking the daisies, when suddenly a White Rabbit with pink eyes ran close by her.
 
There was nothing so very remarkable in that; nor did Alice think it so very much out of the way to hear the Rabbit say to itself, `Oh dear! Oh dear! I shall be late!' (when she thought it over afterwards, it occurred to her that she ought to have wondered at this, but at the time it all seemed quite natural); but when the Rabbit actually took a watch out of its waistcoat-pocket, and looked at it, and then hurried on, Alice started to her feet, for it flashed across her mind that she had never before seen a rabbit with either a waistcoat-pocket, or a watch to take out of it, and burning with curiosity, she ran across the field after it, and fortunately was just in time to see it pop down a large rabbit-hole under the hedge. <ref>Down the Rabbit-Hole. Alice's Adventures in Wonderland, by Lewis Carroll</ref>.
 
</SX>
</SX>
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Latest revision as of 10:52, 23 February 2019

Caption for this structure

  1. Jmol: an open-source browser-based HTML5 viewer and stand-alone Java viewer for chemical structures in 3D [1]
  2. Mol* (/'molstar/) is an open collaboration started by PDBe and RCSB PDB to provide a technology stack for data delivery and analysis tools of macromolecules [2]
  3. Down the Rabbit-Hole. Alice's Adventures in Wonderland, by Lewis Carroll