3mjf: Difference between revisions

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-{{Seed}}
-[[Image:3mjf.jpg|left|200px]]
-<!--
+==Phosphoribosylamine-glycine ligase from Yersinia pestis==
-The line below this paragraph, containing "STRUCTURE_3mjf", creates the "Structure Box" on the page.
+<StructureSection load='3mjf' size='340' side='right' caption='[[3mjf]], [[Resolution|resolution]] 1.47&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3mjf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis_co92 Yersinia pestis co92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MJF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MJF FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
--->
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_3mjf|  PDB=3mjf  |  SCENE=  }}
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">purD, y0501, YPO3729, YP_3092 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=214092 Yersinia pestis CO92])</td></tr>
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoribosylamine--glycine_ligase Phosphoribosylamine--glycine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.4.13 6.3.4.13] </span></td></tr>
-===Phosphoribosylamine-glycine ligase from Yersinia pestis===
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mjf OCA], [http://pdbe.org/3mjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mjf RCSB], [http://www.ebi.ac.uk/pdbsum/3mjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mjf ProSAT]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-MJF is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MJF OCA].
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mj/3mjf_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mjf ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Phosphoribosylamine--glycine ligase]]
-[[Category: Yersinia pestis]]
+[[Category: Yersinia pestis co92]]
-[[Category: Anderson, W F.]]
+[[Category: Anderson, W F]]
-[[Category: Joachimiak, A.]]
+[[Category: Structural genomic]]
-[[Category: Osipiuk, J.]]
+[[Category: Joachimiak, A]]
-[[Category: Papazisi, L.]]
+[[Category: Osipiuk, J]]
-[[Category: Zhou, M.]]
+[[Category: Papazisi, L]]
-[[Category: Center for structural genomics of infectious disease]]
+[[Category: Zhou, M]]
 [[Category: Csgid]]
 [[Category: Ligase]]
 [[Category: Phosphoribosylamine-glycine ligase]]
-[[Category: Structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 26 08:34:37 2010''