Proton Channels: Difference between revisions
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<StructureSection load='' size='450' side='right' scene='Proton_Channels/Cartoon/2' caption='Linear interpolation morph from [[3bkd]] to model 1 of [[2rlf]]. '> | |||
The M2 protein of influenza A virus is a proton channel. Its function is essential for productive infection by the virus. | |||
See [[:Category:Proton_channel]] for a list of all proton channel structures. | |||
In January, 2008, crystallographic and NMR structures were published side by side in ''Nature'' for the transmembrane domains of the M2 protein: [[3bkd]] to [[2rlf]]. The former appeared to be in an open conformation blocked by amantadine, while the latter appeared to be in a closed conformation stabilized by rimantadine. (Neither drug is shown in the morph at right.) | |||
< | |||
<!-- THESE LINKS DO NOT WORK IN THE CAPTION; NEITHER DOES THE FORM [[3bkd]] | |||
caption='Linear interpolation morph from [http://proteopedia.org/wiki/index.php/3bkd 3bkd] to [http://proteopedia.org/wiki/index.php/2rlf 2rlf model 1] ' /> | |||
--> | |||
At right is a [[Morphs|linear-interpolation morph]] between 3BKD and 2RLF, showing the proposed opening and closing of this channel. {{Button_Toggle_Animation2}} | |||
In addition to watching the animation as alpha-helical ribbons, it is useful to watch it <scene name='Proton_Channels/Spacefilled/1'>spacefilled</scene>. '''Be sure to rotate the molecule with your mouse to watch the animation from different perspectives!''' | |||
<scene name='Proton_Channels/Gating/1'>His37 and Trp41</scene> are believed to be crucial for pH-dependent gating. | |||
In addition to watching the animation as alpha-helical ribbons, it is useful to watch it | (The apparent collapse and re-expansion of their sidechains is an artifact due to the [[Morphs|linear interpolation method of morphing]].) Here are His and Trp <scene name='Proton_Channels/Gating/2'>spacefilled</scene>. | ||
To be explained in a later revision, along with new scenes: | |||
[http://www.molmovdb.org/cgi-bin/morph.cgi?ID=b505428-6008 Morph from Yale] | |||
{{Clear}} | |||
==3D structures of ion channels== | |||
[[Ion channels]] | |||
==Additional Resources== | |||
For additional information, see: [[Influenza]] <br /> | |||
For additional information, see: [[Membrane Channels & Pumps]] | |||
<br /> | |||
<br /> | |||
Latest revision as of 09:44, 10 August 2017
<StructureSection load= size='450' side='right' scene='Proton_Channels/Cartoon/2' caption='Linear interpolation morph from 3bkd to model 1 of 2rlf. '>
The M2 protein of influenza A virus is a proton channel. Its function is essential for productive infection by the virus.
See Category:Proton_channel for a list of all proton channel structures.
In January, 2008, crystallographic and NMR structures were published side by side in Nature for the transmembrane domains of the M2 protein: 3bkd to 2rlf. The former appeared to be in an open conformation blocked by amantadine, while the latter appeared to be in a closed conformation stabilized by rimantadine. (Neither drug is shown in the morph at right.)
At right is a linear-interpolation morph between 3BKD and 2RLF, showing the proposed opening and closing of this channel.
In addition to watching the animation as alpha-helical ribbons, it is useful to watch it . Be sure to rotate the molecule with your mouse to watch the animation from different perspectives!
are believed to be crucial for pH-dependent gating. (The apparent collapse and re-expansion of their sidechains is an artifact due to the linear interpolation method of morphing.) Here are His and Trp .
To be explained in a later revision, along with new scenes: Morph from Yale
3D structures of ion channels3D structures of ion channels
Additional ResourcesAdditional Resources
For additional information, see: Influenza
For additional information, see: Membrane Channels & Pumps