3omd: Difference between revisions

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==Crystal structure of unknown function protein from Leptospirillum rubarum==
The line below this paragraph, containing "STRUCTURE_3omd", creates the "Structure Box" on the page.
<StructureSection load='3omd' size='340' side='right' caption='[[3omd]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3omd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"leptospirillum_rubarum"_aliaga_goltsman_et_al._2009 "leptospirillum rubarum" aliaga goltsman et al. 2009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OMD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OMD FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">UBAL2_82410030 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=419542 "Leptospirillum rubarum" Aliaga Goltsman et al. 2009])</td></tr>
{{STRUCTURE_3omd|  PDB=3omd  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3omd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3omd OCA], [http://pdbe.org/3omd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3omd RCSB], [http://www.ebi.ac.uk/pdbsum/3omd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3omd ProSAT]</span></td></tr>
 
</table>
===Crystal structure of unknown function protein from Leptospirillum rubarum===
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
3OMD is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Leptospirillum_rubarum Leptospirillum rubarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OMD OCA].  
    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/om/3omd_consurf.spt"</scriptWhenChecked>
[[Category: Leptospirillum rubarum]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Chang, C.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Chen, Z.]]
  </jmolCheckbox>
[[Category: Cui, H.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3omd ConSurf].
[[Category: Edwards, A.]]
<div style="clear:both"></div>
[[Category: Joachimiak, A.]]
__TOC__
[[Category: MCSG, Midwest Center for Structural Genomics.]]
</StructureSection>
[[Category: Savchenko, A.]]
[[Category: Leptospirillum rubarum aliaga goltsman et al. 2009]]
[[Category: Xu, X.]]
[[Category: Chang, C]]
[[Category: Chen, Z]]
[[Category: Cui, H]]
[[Category: Edwards, A]]
[[Category: Joachimiak, A]]
[[Category: Structural genomic]]
[[Category: Savchenko, A]]
[[Category: Xu, X]]
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: PSI, Protein structure initiative]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
[[Category: Unknown function]]
[[Category: Unknown function]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 15 10:56:11 2010''

Latest revision as of 13:28, 5 August 2016

Crystal structure of unknown function protein from Leptospirillum rubarumCrystal structure of unknown function protein from Leptospirillum rubarum

Structural highlights

3omd is a 2 chain structure with sequence from "leptospirillum_rubarum"_aliaga_goltsman_et_al._2009 "leptospirillum rubarum" aliaga goltsman et al. 2009. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
NonStd Res:,
Gene:UBAL2_82410030 ("Leptospirillum rubarum" Aliaga Goltsman et al. 2009)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3omd, resolution 1.50Å

Drag the structure with the mouse to rotate

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