Interface analysis servers: Difference between revisions
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The purpose of this article is to list and evaluate servers that analyze interfaces within molecular models, such as protein-protein, DNA-protein, RNA-protein, and ligand-protein interfaces. | The purpose of this article is to list and evaluate servers that analyze interfaces within molecular models, such as protein-protein, DNA-protein, RNA-protein, and ligand-protein interfaces. This page does not list ''prediction'' servers. | ||
==COCOMAPS== | ==COCOMAPS== | ||
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*Residue counts and inter-atomic distances are tabulated, but neither surface nor interfacial atom counts (in contrast to PISA). | *Residue counts and inter-atomic distances are tabulated, but neither surface nor interfacial atom counts (in contrast to PISA). | ||
==InterProSurf== | |||
[http://curie.utmb.edu/prosurf.html InterProSurf] operates on entries in the [[PDB]], or uploaded [[atomic coordinate file]]s. Reports numbers of surface and buried atoms for each chain, and areas for each residue deemed to be in the interface. Terms are not defined or explained. | |||
==PDBparam== | |||
[http://www.iitm.ac.in/bioinfo/pdbparam/index.html PDBparam] calculates and lists (as text): | |||
#Identifcation of binding sites | |||
#Inter-residue interactions | |||
#Secondary structure propensities | |||
#Physicochemical properties | |||
==LPC/CSU== | ==LPC/CSU== | ||