2bde: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2bde.gif|left|200px]]
==Crystal Structure of the cytosolic IMP-GMP specific 5'-nucleotidase (lpg0095) from Legionella pneumophila, Northeast Structural Genomics Target LgR1==
 
<StructureSection load='2bde' size='340' side='right' caption='[[2bde]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
{{Structure
== Structural highlights ==
|PDB= 2bde |SIZE=350|CAPTION= <scene name='initialview01'>2bde</scene>, resolution 2.90&Aring;
<table><tr><td colspan='2'>[[2bde]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_33152 Atcc 33152]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BDE FirstGlance]. <br>
|SITE=  
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
|ACTIVITY=  
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">3078646 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=446 ATCC 33152])</td></tr>
|GENE= 3078646 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=446 Legionella pneumophila])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bde OCA], [http://pdbe.org/2bde PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bde RCSB], [http://www.ebi.ac.uk/pdbsum/2bde PDBsum], [http://www.topsan.org/Proteins/NESGC/2bde TOPSAN]</span></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam05761 5_nucleotid]</span>
</table>
|RELATEDENTRY=
== Evolutionary Conservation ==
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bde OCA], [http://www.ebi.ac.uk/pdbsum/2bde PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2bde RCSB]</span>
[[Image:Consurf_key_small.gif|200px|right]]
}}
Check<jmol>
 
  <jmolCheckbox>
'''Crystal Structure of the cytosolic IMP-GMP specific 5'-nucleotidase (lpg0095) from Legionella pneumophila, Northeast Structural Genomics Target LgR1'''
    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/2bde_consurf.spt"</scriptWhenChecked>
 
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
2BDE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Legionella_pneumophila Legionella pneumophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDE OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
[[Category: Legionella pneumophila]]
<div style="clear:both"></div>
[[Category: Single protein]]
__TOC__
[[Category: Abashidze, M.]]
</StructureSection>
[[Category: Acton, T B.]]
[[Category: Atcc 33152]]
[[Category: Conover, K.]]
[[Category: Abashidze, M]]
[[Category: Forouhar, F.]]
[[Category: Acton, T B]]
[[Category: Ho, C K.]]
[[Category: Conover, K]]
[[Category: Hunt, J F.]]
[[Category: Forouhar, F]]
[[Category: Montelione, G T.]]
[[Category: Ho, C K]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Hunt, J F]]
[[Category: Tong, L.]]
[[Category: Montelione, G T]]
[[Category: alpha beta protein]]
[[Category: Structural genomic]]
[[Category: nesg]]
[[Category: Tong, L]]
[[Category: northeast structural genomics consortium]]
[[Category: Alpha beta protein]]
[[Category: protein structure initiative]]
[[Category: Dna binding protein]]
[[Category: psi]]
[[Category: Nesg]]
[[Category: structural genomic]]
[[Category: PSI, Protein structure initiative]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:04:41 2008''

Latest revision as of 15:47, 11 September 2015

Crystal Structure of the cytosolic IMP-GMP specific 5'-nucleotidase (lpg0095) from Legionella pneumophila, Northeast Structural Genomics Target LgR1Crystal Structure of the cytosolic IMP-GMP specific 5'-nucleotidase (lpg0095) from Legionella pneumophila, Northeast Structural Genomics Target LgR1

Structural highlights

2bde is a 1 chain structure with sequence from Atcc 33152. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
NonStd Res:
Gene:3078646 (ATCC 33152)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2bde, resolution 2.90Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA