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User:Jaime Prilusky/Evolutionary Trace: Difference between revisions

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New page: ==Evolutionary Trace== <StructureSection load='1a09' size='340' side='right' caption='Caption for this structure' scene=''> This is a test page to display evolutionary coloring generated b...
 
Jaime Prilusky (talk | contribs)
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==Evolutionary Trace==
==Evolutionary Trace==
<StructureSection load='1a09' size='340' side='right' caption='Caption for this structure' scene=''>
This is a test page to test evolutionary coloring generated by the [http://mammoth.bcm.tmc.edu/uet/index.html Evolutionary Trace] server at Baylor College of Medicine.
This is a test page to display evolutionary coloring generated by the [http://mammoth.bcm.tmc.edu/uet/index.html Evolutionary Trace] server at Baylor College of Medicine.


This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
<table ><tr><td colspan='3'>
<jmol>
  <jmolCheckbox>
    <target>jmol_1a09</target>
    <scriptWhenChecked>set syncMouse on;set syncScript on;sync * on;</scriptWhenChecked>
    <scriptWhenUnchecked>sync * off;</scriptWhenUnchecked>
    <text>Synchronize the 3 models for rotation with your mouse.</text>
  </jmolCheckbox>
</jmol>
</td></tr><tr>
<td>
<jmol><jmolApplet>
<title>1a09</title>
<name>jmol_1a09</name>
<color>white</color><size>300</size>
<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script>
<pspeed>8</pspeed>
<caption>Default coloring for [[1a09]]</caption>
<controls>spin popup</controls>
</jmolApplet>
</jmol>
</td>


</StructureSection>
<td>
== References ==
<jmol><jmolApplet>
<references/>
<title>Consurf 1a09</title>
<name>jmol_consurf</name>
<color>white</color><size>300</size>
<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/1a09_consurf.spt"</script>
<pspeed>8</pspeed>
<caption>Consurf coloring</caption>
<controls>spin popup</controls>
</jmolApplet>
</jmol>
</td>
 
<td>
<jmol><jmolApplet>
<title>ET 1a09</title>
<name>jmol_ET</name>
<color>white</color><size>300</size>
<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select all and not water;dots;spacefill;script "/wiki/ettest/1a09_ETlevels_Jmol.txt";script "/wiki/ettest/ET_coloringscript_Jmol.txt";</script>
<pspeed>8</pspeed>
<caption>Evolutionary Trace coloring</caption>
<controls>spin popup</controls>0
</jmolApplet></jmol>
</td></tr>
<tr valign='top'>
<td>
</td>
<td>[[Image:Consurf key small.gif|300px]]</td>
<td>[[Image:Scale pyetv.png|300px]]</td></tr>
</table>
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