Sandbox Reserved 5: Difference between revisions

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<Structure load='4qa4' size='350' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' /><!-- DO NOT DELETE THE TEMPLATE LINE -->
<!-- DO NOT DELETE THE TEMPLATE LINE -->
{{Template:Sandbox Reserved Eric Martz}}
{{Template:Sandbox Reserved Eric Martz}}
<!-- INSERT YOUR SCENES AND TEXT BELOW THIS LINE -->
<!-- INSERT YOUR SCENES AND TEXT BELOW THIS LINE -->
== This page is about 4QA4. ==
<Structure load='4qa4' size='350' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />
This protein is the Histone deacetylase.
*The surface of 4QA4 that interacts histones. Histones are positively charged.Therefore 4QA4 <scene name='54/545854/Charge/1'>has negative charges.</scene> (<font color="blue">positive charges are blue</font>, <font color="red">negative charges are red</font>).
*<scene name='54/545854/Ligands/1'>The secondary structure of 4QA4. </scene>
(<font color="pink">alpha helices are pink</font>, <font color="green">beta strands are right green</font>, <font color="yellow"> 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide (B3N) and Zinc ion (ZN) are yellow</font>, <font color="blue"> Potassium ion  (K) are blue</font>, <font color="orange">Glycerol(GOL) are orange</font>. Right green, yellow, blue and orange colors are ligands.)

Latest revision as of 10:05, 23 May 2015

This Sandbox is Reserved from May 10, 2015, through July 31, 2015 for use by the class Protein 3D Structure Visualization & Structural Bioinformatics taught by Eric Martz and Keiichi Namba at Osaka University, Japan. This reservation includes Sandbox Reserved 1 through Sandbox Reserved 10. Syllabus.
To get started:
  • Click the 'edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

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This page is about 4QA4.This page is about 4QA4.

Insert caption here

Drag the structure with the mouse to rotate

This protein is the Histone deacetylase.

  • The surface of 4QA4 that interacts histones. Histones are positively charged.Therefore 4QA4 (positive charges are blue, negative charges are red).


(alpha helices are pink, beta strands are right green, 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide (B3N) and Zinc ion (ZN) are yellow, Potassium ion (K) are blue, Glycerol(GOL) are orange. Right green, yellow, blue and orange colors are ligands.)

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Eric Martz, Student
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