User:Nicholas P. Taliceo/Sandbox: Difference between revisions

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==Structure of the Ibuprofen Molecule==
<StructureSection load='1eqg' size='340' side='right' caption='Caption for this structure' scene='60/609967/Ibuprofen_single_molecule/5'>
<StructureSection load='1eqg' size='340' side='right' caption='Caption for this structure' scene=''>
This is a default text for your page '''Nicholas P. Taliceo/Sandbox'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.


<scene name='60/609967/Allatom/2'>Protein buries ligands</scene>
'''Structure of the Ibuprofen Molecule'''


<jmol>
<scene name='60/609967/Ibuprofen_single_molecule/5'>Ibuprofen Single Molecule</scene>
 
*<jmol>
<jmolLink>
  <script> select 701:A; color CPK; spacefill 23%; var a = [300,250,200,170,140,120,100]; for(var i IN a) {wireframe @i; delay 0.4;}
  </script>
  <text>Show the atoms </text>
</jmolLink>
</jmol>
 
 
 
'''Ibuprofen binds to the protein cyclooxygenase'''
 
 
<scene name='60/609967/Allatom/4'>Protein buries ligands</scene>
 
*<jmol>
  <jmolLink>
  <jmolLink>
   <script> slab on; depth 40; var a = [90,80,70,60,55,54,53,52,51]; for(var i IN a) {slab @i; delay 0.4;}
   <script> slab on; depth 40; var a = [90,80,70,60,55,54,53,52,51]; for(var i IN a) {slab @i; delay 0.4;}
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</jmol>
</jmol>


== Function ==
*<jmol>
<jmolLink>
  <script> slab on; depth 40; var a = [51,52,53,54,55,60,70,80,90,100]; for(var i IN a) {slab @i; delay 0.4;}
  </script>
  <text>Slab out of center</text>
</jmolLink>
</jmol>


== Disease ==
<scene name='60/609967/Ibuprofen_only/1'>Ibuprofen Molecules</scene>


<scene name='60/609967/Ibuprofen_single_molecule/4'>Ibuprofen Single Molecule</scene>
== Relevance ==


== Structural highlights ==
</StructureSection>
== Function ==
The protein sits on the surface of a membrane, and makes prostaglandin hormones when not inhibited. There is a nice [http://www.rcsb.org/pdb/education_discussion/molecule_of_the_month/images/4cox_tunnel.gif figure] of the protein and the membrane in a molecule of the month article by David Goodsell.


This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
<scene name='60/609967/With_membrane/1'>Membrane orientation</scene>
 
</StructureSection>
== References ==
<references/>

Latest revision as of 01:29, 24 December 2014


Structure of the Ibuprofen Molecule


Ibuprofen binds to the protein cyclooxygenase




Caption for this structure

Drag the structure with the mouse to rotate

FunctionFunction

The protein sits on the surface of a membrane, and makes prostaglandin hormones when not inhibited. There is a nice figure of the protein and the membrane in a molecule of the month article by David Goodsell.

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