User:Nicholas P. Taliceo/Sandbox: Difference between revisions

No edit summary
Karsten Theis (talk | contribs)
 
(18 intermediate revisions by 2 users not shown)
Line 1: Line 1:
==Your Heading Here (maybe something like 'Structure')==
<StructureSection load='1eqg' size='340' side='right' caption='Caption for this structure' scene='60/609967/Ibuprofen_single_molecule/5'>
<StructureSection load='1eqg' size='340' side='right' caption='Caption for this structure' scene=''>
This is a default text for your page '''Nicholas P. Taliceo/Sandbox'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.


== Function ==
'''Structure of the Ibuprofen Molecule'''
 
<scene name='60/609967/Ibuprofen_single_molecule/5'>Ibuprofen Single Molecule</scene>
 
*<jmol>
<jmolLink>
  <script> select 701:A; color CPK; spacefill 23%; var a = [300,250,200,170,140,120,100]; for(var i IN a) {wireframe @i; delay 0.4;}
  </script>
  <text>Show the atoms </text>
</jmolLink>
</jmol>
 
 
 
'''Ibuprofen binds to the protein cyclooxygenase'''
 
 
<scene name='60/609967/Allatom/4'>Protein buries ligands</scene>


== Disease ==
*<jmol>
<scene name='60/609967/Ibuprofen_only/1'>Ibuprofen Molecules</scene>
<jmolLink>
  <script> slab on; depth 40; var a = [90,80,70,60,55,54,53,52,51]; for(var i IN a) {slab @i; delay 0.4;}
  </script>
  <text>Slab into center of molecule</text>
</jmolLink>
</jmol>


<scene name='60/609967/Ibuprofen_single_molecule/1'>Ibuprofen Single Molecule</scene>
*<jmol>
== Relevance ==
<jmolLink>
  <script> slab on; depth 40; var a = [51,52,53,54,55,60,70,80,90,100]; for(var i IN a) {slab @i; delay 0.4;}
  </script>
  <text>Slab out of center</text>
</jmolLink>
</jmol>


== Structural highlights ==


This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.


</StructureSection>
</StructureSection>
== References ==
== Function ==
<references/>
The protein sits on the surface of a membrane, and makes prostaglandin hormones when not inhibited. There is a nice [http://www.rcsb.org/pdb/education_discussion/molecule_of_the_month/images/4cox_tunnel.gif figure] of the protein and the membrane in a molecule of the month article by David Goodsell.
 
<scene name='60/609967/With_membrane/1'>Membrane orientation</scene>