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| [[Image:2b9m.gif|left|200px]] | | #REDIRECT [[4v4s]] This PDB entry is obsolete and replaced by 4v4s |
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| {{Structure
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| |PDB= 2b9m |SIZE=350|CAPTION= <scene name='initialview01'>2b9m</scene>, resolution 6.76Å
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| |SITE=
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| |LIGAND=
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| |ACTIVITY=
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| |GENE= prfA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus])
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| }}
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| '''30S ribosomal subunit, tRNAs, mRNA and release factor RF2 from a crystal structure of the whole ribosomal complex. This file contains the 30S ribosomal subunit, tRNAs, mRNA and release factor RF2 from a crystal structure of the whole ribosomal complex". The entire crystal structure contains one 70S ribosome, tRNAs, mRNA and release factor RF2 and is described in remark 400.'''
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| ==Overview==
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| During protein synthesis, translational release factors catalyze the release of the polypeptide chain when a stop codon on the mRNA reaches the A site of the ribosome. The detailed mechanism of this process is currently unknown. We present here the crystal structures of the ribosome from Thermus thermophilus with RF1 and RF2 bound to their cognate stop codons, at resolutions of 5.9 Angstrom and 6.7 Angstrom, respectively. The structures reveal details of interactions of the factors with the ribosome and mRNA, including elements previously implicated in decoding and peptide release. They also shed light on conformational changes both in the factors and in the ribosome during termination. Differences seen in the interaction of RF1 and RF2 with the L11 region of the ribosome allow us to rationalize previous biochemical data. Finally, this work demonstrates the feasibility of crystallizing ribosomes with bound factors at a defined state along the translational pathway.
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| ==About this Structure==
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| 2B9M is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli], [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] and [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb27 Thermus thermophilus hb27]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B9M OCA].
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| ==Reference==
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| Crystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon., Petry S, Brodersen DE, Murphy FV 4th, Dunham CM, Selmer M, Tarry MJ, Kelley AC, Ramakrishnan V, Cell. 2005 Dec 29;123(7):1255-66. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16377566 16377566]
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| [[Category: Escherichia coli]]
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| [[Category: Protein complex]]
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| [[Category: Thermus thermophilus]]
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| [[Category: Thermus thermophilus hb27]]
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| [[Category: Brodersen, D E.]]
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| [[Category: Dunham, C M.]]
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| [[Category: IV, F V.Murphy.]]
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| [[Category: Kelley, A C.]]
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| [[Category: Petry, S.]]
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| [[Category: Ramakrishnan, V.]]
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| [[Category: Selmer, M.]]
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| [[Category: Tarry, M J.]]
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| [[Category: release factor]]
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| [[Category: ribosome]]
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| [[Category: translation]]
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| ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:59:09 2008''
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This PDB entry is obsolete and replaced by 4v4s