Anisotropic refinement: Difference between revisions
mNo edit summary |
mNo edit summary |
||
| (7 intermediate revisions by 2 users not shown) | |||
| Line 3: | Line 3: | ||
==Analysis== | ==Analysis== | ||
[http://skuld.bmsc.washington.edu/parvati/parvati.html PARVATI] - Protein Anisotropic Refinement Validation and Analysis Tool. | [http://skuld.bmsc.washington.edu/parvati/parvati.html PARVATI] - Protein Anisotropic Refinement Validation and Analysis Tool. | ||
The PARVATI server accepts a PDB file containing ANISOU records or TLS records. | The PARVATI server accepts a PDB file containing ANISOU records or TLS records. | ||
| Line 15: | Line 13: | ||
* ANISOU values are listed only if they have been provided by the depositor. The depositor provides ANISOU records, PDB verifies their format. | * ANISOU values are listed only if they have been provided by the depositor. The depositor provides ANISOU records, PDB verifies their format. | ||
* The anisotropic temperature factors are related to the corresponding ATOM/HETATM isotropic temperature factors as B(eq), as described in the ATOM and HETATM sections. | * The anisotropic temperature factors are related to the corresponding ATOM/HETATM isotropic [[Temperature value#Data Format|temperature factors]] as B(eq), as described in the ATOM and HETATM sections. | ||
==Some PDB entries that include ANISOU records== | |||
* [[3kg2]] | |||
* [[4un3]], [[4un4]], and [[4un5]] | |||
==Related== | |||
[http://pymmlib.sourceforge.net/doc/tlsview/tlsview.html TLSView]: A Molecular Viewer for TLS Rigid Body Motion | |||
==See Also== | |||
*[[Temperature value]] | |||
*[[Quality assessment for molecular models]] | |||
==References== | ==References== | ||
<ref group="xtra">PMID: 10329772</ref><references group="xtra"/><ref group="xtra">PMID: 10666575</ref><references group="xtra"/><ref group="xtra">PMID: 15809496</ref><references group="xtra"/> | <ref group="xtra">PMID: 10329772</ref><references group="xtra"/><ref group="xtra">PMID: 10666575</ref><references group="xtra"/><ref group="xtra">PMID: 15809496</ref><references group="xtra"/> | ||