Distinguishing the modes of Jmol on Proteopedia: Difference between revisions
m New page: Jmol is the primary visualization software used in Proteopedia. Jmol is a [http://en.wikipedia.org/wiki/Cross-platform cross-platform] program written in Java, but able to run in an HT... |
mNo edit summary |
||
| (5 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
Jmol is the primary visualization software used in Proteopedia. Jmol is a [http://en.wikipedia.org/wiki/Cross-platform cross-platform] program written in [[Java]], but able to run in an HTML/Javascript-mode that does not require [[Java]]. The HTML/Javascript mode is presently the default on Proteopedia as it runs on more platforms. | [[Jmol]] is the primary visualization software used in Proteopedia. Jmol is a [http://en.wikipedia.org/wiki/Cross-platform cross-platform] program written in [[Java]], but able to run in an HTML/Javascript-mode that does not require [[Java]]. The HTML/Javascript mode is presently the default on Proteopedia as it runs on more platforms. | ||
'''At this time, Jmol still performs best in Java mode and users are encouraged to use that on Proteoepdia.''' See [[Using Java for Rendering Structures|here]] for how to opt in to Java mode. | '''At this time, Jmol still performs best in Java mode and users are encouraged to use that on Proteoepdia.''' See [[Using Java for Rendering Structures|here]] for how to opt in to Java mode. See [[Testing PDB File Sizes|here]] for the benchmark comparisons. | ||
You can easily distinguish which mode Jmol is presently running in by looking in the bottom right corner. You'll see <font color="maroon">Jmol_S</font> in the bottom right corner of the Proteopedia structure scene windows when Jmol is running with the signed Java applet. You'll see <font color="gold">JSmol</font> in the bottom right corner of structure windows when Jmol is operating in HTML/Javascript mode. | You can easily distinguish which mode [[Jmol]] is presently running in by looking in the bottom right corner. You'll see <font color="maroon">Jmol_S</font> in the bottom right corner of the Proteopedia structure scene windows when Jmol is running with the signed Java applet. You'll see <font color="gold">JSmol</font> in the bottom right corner of structure windows when Jmol is operating in HTML/Javascript mode. | ||
{| | {| | ||
| [[Image:Making image with JSmol shown for vs Jmol S.png|left|400px]] | |||
| | |||
| [[Image:Making image with Jmol S shown for vs JSmol.png|left|400px]] | | [[Image:Making image with Jmol S shown for vs JSmol.png|left|400px]] | ||
|} | |} | ||
==See also== | |||
*[[Jmol]] | |||
*[[Java]] | |||
*[[Using Java for Rendering Structures]] | |||
*[[Testing PDB File Sizes]] | |||