User:Alice Harmon/Sandbox 4: Difference between revisions

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[[Image:ABA model 2 med.jpg|left]]
[[Image:ABA model 2 med.jpg|left]]
==Role in Abscisic Acid signaling==
==Role in Abscisic Acid signaling==
SnRK2.6/OST1/SRK2E is a triply-named protein kinase from Arabidopsis, which is activated by the abscisic acid (ABA) response pathway in plants<ref name = "Mustilli2002">PMID:12468729</ref><ref>PMID:12514244</ref><ref name = "Nakashima2009">PMID:19541597</ref><ref name = "Fujii2007">PMID:17307925</ref>. As shown in the figure, in unstimulated cells SnRK2.6/OST1/SRK2E (K) and a protein phosphatase 2C (P) are in a complex (K-P) in which the kinase is dephosphorylated and inactive<ref name ="Umezawa2009"> PMID:19805022 </ref><ref name ="Soon2012"> PMID:22116026 </ref>. The kinase and phosphatase are proposed to be tethered via the C-terminal sequence (dashed line) of the kinase<ref name ="Umezawa2009"/><ref name ="Soon2012"/><ref>PMID:16365038</ref>. When ABA levels in the cytosol rise,  ABA binds to an ABA receptor (R)<ref>PMID:19893533</ref><ref>PMID:19407143</ref><ref>PMID:19407142</ref>. The activated receptor (R<sup>.</sup>ABA) binds to the protein phosphatase (R<sup>.</sup>ABA-P) and inactivates it. SnRK2.6/OST1/SRK2E, although still tethered to the phosphatase, is now free to be activated by autophosphorylation or phoshorylation by another protein kinase<ref>PMID:17103012</ref><ref>PMID:16980311</ref>.  Activation of SnRK2.6/OST1/SRK2E leads to phosphorylation of: 1) ion channels SLAC1<ref>PMID: 19955405</ref> and KAT1<ref>PMID: 19785574</ref> in guard cells and stomatal closure; 2)  transcription factor ABI5<ref name = "Nakashima2009"/> in seeds/seedlings and dormancy/growth arrest; or 3) phosphorylation of transcription factor AREB/ABF <ref>PMID: 16446457</ref><ref name = "Fujii2007"/> in vegetative tissue and stress tolerance and growth regulation.  
SnRK2.6/OST1/SRK2E is a triply-named protein kinase from Arabidopsis, which is activated by the abscisic acid (ABA) response pathway<ref name = "Mustilli2002">PMID:12468729</ref><ref>PMID:12514244</ref><ref name = "Nakashima2009">PMID:19541597</ref><ref name = "Fujii2007">PMID:17307925</ref>. As shown in the figure, in unstimulated cells SnRK2.6/OST1/SRK2E (K) and a protein phosphatase 2C (P) are in a complex (K-P) in which the kinase is dephosphorylated and inactive<ref name ="Umezawa2009"> PMID:19805022 </ref><ref name ="Soon2012"> PMID:22116026 </ref>. The kinase and phosphatase are proposed to be tethered via the C-terminal sequence (dashed line) of the kinase<ref name ="Umezawa2009"/><ref name ="Soon2012"/><ref>PMID:16365038</ref>. When ABA levels in the cytosol rise,  ABA binds to an ABA receptor (R)<ref>PMID:19893533</ref><ref>PMID:19407143</ref><ref>PMID:19407142</ref>. The activated receptor (R<sup>.</sup>ABA) binds to the protein phosphatase (R<sup>.</sup>ABA-P) and inactivates it. SnRK2.6/OST1/SRK2E, although still tethered to the phosphatase, is now free to be activated by autophosphorylation or phoshorylation by another protein kinase<ref>PMID:17103012</ref><ref>PMID:16980311</ref>.  Activation of SnRK2.6/OST1/SRK2E leads to phosphorylation of: 1) ion channels SLAC1<ref>PMID: 19955405</ref> and KAT1<ref>PMID: 19785574</ref> in guard cells and stomatal closure; 2)  transcription factor ABI5<ref name = "Nakashima2009"/> in seeds/seedlings and dormancy/growth arrest; or 3) phosphorylation of transcription factor AREB/ABF <ref>PMID: 16446457</ref><ref name = "Fujii2007"/> in vegetative tissue and stress tolerance and growth regulation.  


Structures in the figure are: R, apo pYR2, [[3kdh]];  R<sup>.</sup>ABA, PYR2<sup>.</sup>ABA, [[3kdi]]; K-P; SnRK2.6-HAB1, [[3ujg]]; R<sup>.</sup>ABA-P, PYR2<sup>.</sup>ABA-ABI2, [[3ujl]]; K, SnRK2.6,[[3uc4]].
Structures in the figure are: R, apo pYR2, [[3kdh]];  R<sup>.</sup>ABA, PYR2<sup>.</sup>ABA, [[3kdi]]; K-P; SnRK2.6-HAB1, [[3ujg]]; R<sup>.</sup>ABA-P, PYR2<sup>.</sup>ABA-ABI2, [[3ujl]]; K, SnRK2.6,[[3uc4]].
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===PP2C structures===  
==References==


[[1a6q]] – hPP2C <br />
[[2iq1]] – hPP2C κ <br />
[[2p8e]] – hPP2C β<br />
[[2cm1]] – PP2C + Mn – Micobacterium tuberculosis<br />
[[3d8k]] – PP2C – Toxoplasma gondii<br />
[[3jrq]], [[3kdj]], [[3nmn]] – AtPP2C + Pyl1 – Arabidopsis thaliana<br />
[[3nmt]], [[3kb3]], [[3nmv]], [[3ujl]] – AtPP2C + Pyl2<br />
[[4ds8]] – AtPP2C + Pyl3 + Mn<br />
[[3rt0]] – AtPP2C (mutant) + Pyl10<br />
[[3qn1]], [[3zvu]] – AtPP2C + Pyr1<br />
[[3ujg]] – AtPP2C + SNRK2<br />
[[3ujk]] – AtPP2C <br />


==References==
<references/>
<references/>
==See Also==
[http://en.wikipedia.org/wiki/Abscisic_acid] Abscisic Acid in Wikipedia