User:Karl Oberholser: Difference between revisions

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''It is with great sadness that we report the death of [[Karl Oberholser]] on July 25, 2013. Karl was an innovator in educational molecular visualization, and a member of the [[Proteopedia:Team|Editorial Board of Proteopedia.Org]]. He will be greatly missed.'' [[User:Eric Martz|Eric Martz]] 01:55, 28 July 2013 (IDT)

</td></tr></table></center>

<br>

==Karl Oberholser==

[[Image:Karl 6-08_2.jpg|right|150px]]

Professor Emeritus, Chemistry and Biochemistry Department, Messiah College, ~~Grantham~~, PA, USA

Professor Emeritus, Chemistry and Biochemistry Department, Messiah College, Mechanicsburg, PA, USA

<br>

''<email>oberhols@messiah.edu</email>''<p>

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==Proteopedia Pages==

*[[~~User:Karl Oberholser/Sandbox 1~~]] ~~- sandbox for my development work~~

Introductory Topics

*[[~~Fibroins~~]]

* [[Intro._to_Protein_Structure]]

*[[Alpha-~~helical coiled~~-~~coil]]~~

* [[Carbohydrates]] - Series of pages that focus on aspects of the 3D structure of mono-, di-, and polysaccharides that are not easily illustrated with 2D figures in text books.

*[[~~Globular Proteins~~]]

* [[Syn_and_anti_nucleosides]] - Illustrates the structural difference between the syn and anti configurations of nucleosides and the steric hindrance that is present in the syn configuration of pyrimidine nucleosides.

Specific proteins

*[[Oxymyoglobin]]

*[[Psi_and_Phi_Angles]]

*[[Ramachandran_Plots]]

*[[User:Karl_Oberholser/PPDK_large]] - Large frame of a movie of the mechanism of pyruvate phosphate dikinase. The original page with a smaller movie frame and a description of the mechanism is [[Pyruvate_phosphate_dikinase|here]].

*[[User:Karl_Oberholser/Phosphoenolpyruvate:Sugar_Phosphotransferase]] - Large frame of a movie of the mechanism of Enzyme I of the Phosphoenolpyruvate:Sugar Phosphotransferase System. The original page with a smaller movie frame and a description of the system and mechanism is [[Enzyme_I_of_the_Phosphoenolpyruvate:Sugar_Phosphotransferase_System|here]].

*[[Complex III of Electron Transport Chain]] - After illustration of the structures and relative positions of the active peptides, the reactions of the Q cycle are illustrated and explained.

*[[Syn_and_anti_nucleosides]] - Illustrates the structural difference between the syn and anti configurations of nucleosides and the steric hindrance that is present in the syn configuration of pyrimidine nucleosides.

*[[Archaeal_Histones]] - Illustrates the structural features of two histones and the dimer of one of them.

*[[Collagen]] - Illustrates the structure of a collagen segment as well as the structure of a mutated tropocollagen.

*[[Complex III of Electron Transport Chain]] - After illustration of the structures and relative positions of the active peptides, the reactions of the Q cycle are illustrated and explained.

*[[User:Karl_Oberholser/PPDK_large]] - Large frame of a movie of the mechanism of pyruvate phosphate dikinase. The original page with a smaller movie frame and a description of the mechanism is [[Pyruvate_phosphate_dikinase|here]].

*[[User:Karl_Oberholser/Phosphoenolpyruvate:Sugar_Phosphotransferase]] - Large frame of a movie of the mechanism of Enzyme I of the Phosphoenolpyruvate:Sugar Phosphotransferase System. The original page with a smaller movie frame and a description of the system and mechanism is [[Enzyme_I_of_the_Phosphoenolpyruvate:Sugar_Phosphotransferase_System|here]].

<br>

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*[http://chemapps.stolaf.edu/klotho Klotho Biochemicals in Jmol] - A searchable list of common biochemicals whose structures can be displayed conveniently in Jmol.

*[http://www.messiah.edu/molscilab/jtat_080120/acetylcholinesterase/contents/contents.htm Acetylcholinesterase]

*[http://~~www~~.~~messiah~~.~~edu~~/~~molscilab~~/~~index_sub_carbo~~.htm ~~Carbohydrates~~] - ~~Series of tutorials that focus on aspects of the~~ 3D ~~structure~~ of ~~mono-~~, ~~di-~~, ~~and polysaccharides that are not easily illustrated with 2D figures in text books~~.

*[http://biomodel.uah.es/en/model3/index.htm Biomodel-3] - 3D structures of carbohydrates, lipids, amino acids, nucleic acids.

<br>

== Helpful ~~Development~~ Pages ==

== Helpful Pages ==

*[[Help:Editing]]

*[[Help:Color_Keys]]

*[[Help:Copying_FirstGlance_Scenes_into_Proteopedia]]

*[http://proteopedia.org/tools.html Small Molecules]

*[[Proteopedia:Wishlist]]

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*[http://proteopedia.org/wiki/index.php?limit=100&title=Special%3AContributions&contribs=user&target=Karl+Oberholser&namespace=6&year=&month=-1 Files uploaded by Karl Obeerholser]

*[http://jena3d.fli-leibniz.de/ Jena3D Viewer]

*[[Special:SandboxReservation]]

== Other Useful sites ==

* [http://stolaf.edu/people/hansonr/jmol/contact/ligand.htm Implementation of Jmol '''Contact;''' command]

* [http://proteopedia.org/wiki/index.php/User:Wayne_Decatur/Sandbox_TestCompareinScriptAuthoring Making a fake green link]

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+<center><table style="background:#e0e0e0;" border=1 width="85%" cellpadding="10"><tr><td>
+''It is with great sadness that we report the death of [[Karl Oberholser]] on July 25, 2013. Karl was an innovator in educational molecular visualization, and a member of the [[Proteopedia:Team|Editorial Board of Proteopedia.Org]]. He will be greatly missed.'' [[User:Eric Martz|Eric Martz]] 01:55, 28 July 2013 (IDT)
+</td></tr></table></center>
+<br>
 ==Karl Oberholser==
 [[Image:Karl 6-08_2.jpg|right|150px]]
-Professor Emeritus, Chemistry and Biochemistry Department, Messiah College, Grantham, PA, USA
+Professor Emeritus, Chemistry and Biochemistry Department, Messiah College, Mechanicsburg, PA, USA
 <br>
 ''<email>oberhols@messiah.edu</email>''<p>
@@ Line 7: / Line 12: @@
 ==Proteopedia Pages==
-*[[User:Karl Oberholser/Sandbox 1]] - sandbox for my development work
+Introductory Topics
-*[[Fibroins]]
+* [[Intro._to_Protein_Structure]]
-*[[Alpha-helical coiled-coil]]
+* [[Carbohydrates]] - Series of pages that focus on aspects of the 3D structure of mono-, di-, and polysaccharides that are not easily illustrated with 2D figures in text books.
-*[[Globular Proteins]]
+* [[Syn_and_anti_nucleosides]] - Illustrates the structural difference between the syn and anti configurations of nucleosides and the steric hindrance that is present in the syn configuration of pyrimidine nucleosides.
+Specific proteins
 *[[Oxymyoglobin]]
-*[[Psi_and_Phi_Angles]]
-*[[Ramachandran_Plots]]
-*[[User:Karl_Oberholser/PPDK_large]] - Large frame of a movie of the mechanism of pyruvate phosphate dikinase.  The original page with a smaller movie frame and a description of the mechanism is [[Pyruvate_phosphate_dikinase|here]].
-*[[User:Karl_Oberholser/Phosphoenolpyruvate:Sugar_Phosphotransferase]] - Large frame of a movie of the mechanism of Enzyme I of the Phosphoenolpyruvate:Sugar Phosphotransferase System.  The original page with a smaller movie frame and a description of the system and mechanism is [[Enzyme_I_of_the_Phosphoenolpyruvate:Sugar_Phosphotransferase_System|here]].
-*[[Complex III of Electron Transport Chain]] - After illustration of the structures and relative positions of the active peptides, the reactions of the Q cycle are illustrated and explained.
-*[[Syn_and_anti_nucleosides]] - Illustrates the structural difference between the syn and anti configurations of nucleosides and the steric hindrance that is present in the syn configuration of pyrimidine nucleosides.
 *[[Archaeal_Histones]] - Illustrates the structural features of two histones and the dimer of one of them.
 *[[Collagen]] - Illustrates the structure of a collagen segment as well as the structure of a mutated tropocollagen.
+*[[Complex III of Electron Transport Chain]] - After illustration of the structures and relative positions of the active peptides, the reactions of the Q cycle are illustrated and explained.
+*[[User:Karl_Oberholser/PPDK_large]] - Large frame of a movie of the mechanism of pyruvate phosphate dikinase.  The original page with a smaller movie frame and a description of the mechanism is [[Pyruvate_phosphate_dikinase|here]].
+*[[User:Karl_Oberholser/Phosphoenolpyruvate:Sugar_Phosphotransferase]] - Large frame of a movie of the mechanism of Enzyme I of the Phosphoenolpyruvate:Sugar Phosphotransferase System.  The original page with a smaller movie frame and a description of the system and mechanism is [[Enzyme_I_of_the_Phosphoenolpyruvate:Sugar_Phosphotransferase_System|here]].
 <br>
@@ Line 25: / Line 30: @@
 *[http://chemapps.stolaf.edu/klotho Klotho Biochemicals in Jmol] - A searchable list of common biochemicals whose structures can be displayed conveniently in Jmol.
 *[http://www.messiah.edu/molscilab/jtat_080120/acetylcholinesterase/contents/contents.htm Acetylcholinesterase]
-*[http://www.messiah.edu/molscilab/index_sub_carbo.htm Carbohydrates] - Series of tutorials that focus on aspects of the 3D structure of mono-, di-, and polysaccharides that are not easily illustrated with 2D figures in text books.
+*[http://biomodel.uah.es/en/model3/index.htm Biomodel-3] - 3D structures of carbohydrates, lipids, amino acids, nucleic acids.
 <br>
-== Helpful Development Pages ==
+== Helpful Pages ==
 *[[Help:Editing]]
 *[[Help:Color_Keys]]
+*[[Help:Copying_FirstGlance_Scenes_into_Proteopedia]]
 *[http://proteopedia.org/tools.html Small Molecules]
 *[[Proteopedia:Wishlist]]
@@ Line 39: / Line 45: @@
 *[http://proteopedia.org/wiki/index.php?limit=100&title=Special%3AContributions&contribs=user&target=Karl+Oberholser&namespace=6&year=&month=-1 Files uploaded by Karl Obeerholser]
 *[http://jena3d.fli-leibniz.de/ Jena3D Viewer]
+*[[Special:SandboxReservation]]
+== Other Useful sites ==
+* [http://stolaf.edu/people/hansonr/jmol/contact/ligand.htm Implementation of Jmol '''Contact;''' command]
+* [http://proteopedia.org/wiki/index.php/User:Wayne_Decatur/Sandbox_TestCompareinScriptAuthoring Making a fake green link]