Template:STRUCTURE 1m7x: Difference between revisions

Latest revision as of 00:24, 6 December 2012

Activity:

1,4-alpha-glucan branching enzyme, with EC number 2.4.1.18

Structural annotation:
Resources:	CATH : 1M7Xa02, 1M7Xa01, 1M7Xa03, 1M7Xb03, 1M7Xb02, 1M7Xb01, 1M7Xc02, 1M7Xc03, 1M7Xc01, 1M7Xd02, 1M7Xd01, 1M7Xd03 InterPro : Ipr006047, Ipr004193, Ipr006407, Ipr013780, Ipr013783, Ipr013781, Ipr014756, Ipr006048, Ipr013782 Pfam : PF02922, PF00128, PF02806 SCOP : d1m7xa2, d1m7xa1, d1m7xa3, d1m7xb3, d1m7xb1, d1m7xb2, d1m7xc1, d1m7xc3, d1m7xc2, d1m7xd1, d1m7xd2, d1m7xd3 UniProt : P07762

Functional annotation:
Biological process:	carbohydrate metabolic process glycogen biosynthetic process
Molecular function:	catalytic activity hydrolase activity, hydrolyzing O-glycosyl compounds 1,4-alpha-glucan branching enzyme activity cation binding transferase activity transferase activity, transferring glycosyl groups

Evolutionary conservation:

Toggle Conservation Colors:	Rows = identical sequences:
Further Information:	Caveats, Explanation, Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, RCSB, PDBsum

Coordinates:

save as pdb, mmCIF, xml

@@ Line 1: / Line 1: @@
 {{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1m7x, resolution 2.3&Aring; (<scene name='initialview01'>initial scene</scene>)
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1m7x]], [[Resolution|resolution]] 2.30&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-|SITE=
-|LIGAND=
 |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/1,4-alpha-glucan_branching_enzyme 1,4-alpha-glucan branching enzyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.18 2.4.1.18] </span>
-|GENE=
+|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1m7x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m7x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1m7x RCSB], [http://www.ebi.ac.uk/pdbsum/1m7x PDBsum]</span>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=smart00642 Aamy], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02855 Glycogen_branching_enzyme_N_term], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK12313 PRK12313], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02806 Alpha-amylase_C]</span>
+|FUNCTION={{GO|id=GO:0003824 | text = catalytic activity}}{{GO|id=GO:0004553 | text = hydrolase activity, hydrolyzing O-glycosyl compounds}}{{GO|id=GO:0003844 | text = 1,4-alpha-glucan branching enzyme activity}}{{GO|id=GO:0043169 | text = cation binding}}{{GO|id=GO:0016740 | text = transferase activity}}{{GO|id=GO:0016757 | text = transferase activity, transferring glycosyl groups}}
-|RELATEDENTRY=
+|PROCESS={{GO|id=GO:0005975 | text = carbohydrate metabolic process}}{{GO|id=GO:0005978 | text = glycogen biosynthetic process}}
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1m7x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m7x OCA], [http://www.ebi.ac.uk/pdbsum/1m7x PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1m7x RCSB]</span>
+|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m7xA02 1M7Xa02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m7xA01 1M7Xa01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m7xA03 1M7Xa03], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m7xB03 1M7Xb03], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m7xB02 1M7Xb02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m7xB01 1M7Xb01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m7xC02 1M7Xc02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m7xC03 1M7Xc03], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m7xC01 1M7Xc01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m7xD02 1M7Xd02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m7xD01 1M7Xd01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m7xD03 1M7Xd03]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006047 Ipr006047], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004193 Ipr004193], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006407 Ipr006407], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013780 Ipr013780], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013783 Ipr013783], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013781 Ipr013781], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014756 Ipr014756], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006048 Ipr006048], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013782 Ipr013782]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF02922 PF02922], [http://pfam.sanger.ac.uk/family?acc=PF00128 PF00128], [http://pfam.sanger.ac.uk/family?acc=PF02806 PF02806]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78750 d1m7xa2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78749 d1m7xa1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78751 d1m7xa3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78754 d1m7xb3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78752 d1m7xb1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78753 d1m7xb2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78755 d1m7xc1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78757 d1m7xc3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78756 d1m7xc2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78758 d1m7xd1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78759 d1m7xd2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78760 d1m7xd3]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P07762 P07762]</span>
+|uPDB=1M7X|CONSURF={{!}}-
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
+<jmol>
+<jmolButton>
+<script></script>
+<text>A [x]</text>
+<name>jmb_1m7x_A</name>
+<title>toggle chain A</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>B [x]</text>
+<name>jmb_1m7x_B</name>
+<title>toggle chain B</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>C [x]</text>
+<name>jmb_1m7x_C</name>
+<title>toggle chain C</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>D [x]</text>
+<name>jmb_1m7x_D</name>
+<title>toggle chain D</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
 }}

Template:STRUCTURE 1m7x: Difference between revisions

Latest revision as of 00:24, 6 December 2012

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