User:Eric Martz/Sandbox 10: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
Eric Martz (talk | contribs)
ConfirmAccount, Editor, Tester, Administrators
27,351 edits
No edit summary
Eric Martz (talk | contribs)
ConfirmAccount, Editor, Tester, Administrators
27,351 edits
No edit summary
 
(26 intermediate revisions by the same user not shown)
Line 1: Line 1:
Proposed Title: Gramicidin Channel in Lipid Bilayer
<applet load='3hyd' size='400' frame='true' align='right'  />


<!--{{Theoretical_model}} says "protein"-->
<scene name='User:Eric_Martz/Sandbox_10/Whole_peptide/1'>Heptapeptide as balls/sticks</scene>.
<table style="background-color:#ffffc0" cellpadding="8" width="95%" border="0"><tr><td valign='top'>[[Image:Note.gif|left]]  '''Theoretical Model:'''
The structure described on this page was determined [[theoretical_models|theoretically]], and hence should be interpreted with caution.</td></tr></table>


<applet size='400' frame='true' align='right' caption='Theoretical model of gramicidin in a lipid bilayer (phosphatidyl ethanolamine).'
<scene name='User:Eric_Martz/Sandbox_10/Hbond_angles_to_n-term/1'>Show putative hbonds between N-terminus and water</scene>.
scene='User:Eric_Martz/Sandbox_10/Gramicidin/4' />
 
Two copies of the gramicidin protein are shown here (<scene name='User:Eric_Martz/Sandbox_10/Gramicidin/4'>restore initial scene</scene>) arranged as they are believed to be when they form a channel through a lipid bilayer membrane<ref>PMID: 7529578</ref>. The shape of the protein is shown transparent (ghostly), and a backbone trace connecting the alpha carbon atoms of each amino acid chain is opaque (solid).
 
<ul>
<li>Show <scene name='User:Eric_Martz/Sandbox_10/Gramicidin/2'>only the backbone</scene> of the gramicidin protein chains.
</li>
<li><scene name='User:Eric_Martz/Sandbox_10/Gramicidin_with_bilayer/3'>Show a slice of the lipid bilayer.</scene> (Most hydrogen atoms are omitted.)
</li>
<li>Show <scene name='User:Eric_Martz/Sandbox_10/Hydrated_bilayer_w_gramicidin/1'>water</scene>. Notice how the hydrophobic lipid &quot;tails&quot; exclude water.
</li>
</ul>
 
{{Clear}}
==References==
<references />

Latest revision as of 06:21, 30 March 2010

PDB ID 3hyd

Drag the structure with the mouse to rotate

.

.

Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=User:Eric_Martz/Sandbox_10&oldid=1062234"