View source for 4v5k


==Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome==
<StructureSection load='4v5k' size='340' side='right'caption='[[4v5k]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[4v5k]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2xfz 2xfz], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2xg0 2xg0], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2xg1 2xg1] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2xg2 2xg2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V5K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V5K FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A3P:ADENOSINE-3-5-DIPHOSPHATE'>A3P</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v5k OCA], [https://pdbe.org/4v5k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v5k RCSB], [https://www.ebi.ac.uk/pdbsum/4v5k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v5k ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/RS2_THET8 RS2_THET8] Spans the head-body hinge region of the 30S subunit. Is loosely associated with the 30S subunit.[HAMAP-Rule:MF_00291_B]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The toxin colicin E3 targets the 30S subunit of bacterial ribosomes and cleaves a phosphodiester bond in the decoding center. We present the crystal structure of the 70S ribosome in complex with the cytotoxic domain of colicin E3 (E3-rRNase). The structure reveals how the rRNase domain of colicin binds to the A site of the decoding center in the 70S ribosome and cleaves the 16S ribosomal RNA (rRNA) between A1493 and G1494. The cleavage mechanism involves the concerted action of conserved residues Glu62 and His58 of the cytotoxic domain of colicin E3. These residues activate the 16S rRNA for 2' OH-induced hydrolysis. Conformational changes observed for E3-rRNase, 16S rRNA and helix 69 of 23S rRNA suggest that a dynamic binding platform is required for colicin E3 binding and function.

Structural basis for 16S ribosomal RNA cleavage by the cytotoxic domain of colicin E3.,Ng CL, Lang K, Meenan NA, Sharma A, Kelley AC, Kleanthous C, Ramakrishnan V Nat Struct Mol Biol. 2010 Oct;17(10):1241-6. Epub 2010 Sep 19. PMID:20852642<ref>PMID:20852642</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 4v5k" style="background-color:#fffaf0;"></div>

==See Also==
*[[Colicin 3D structures|Colicin 3D structures]]
*[[Ribosomal protein L15|Ribosomal protein L15]]
*[[Ribosomal protein L19|Ribosomal protein L19]]
*[[Ribosomal protein L21|Ribosomal protein L21]]
*[[Ribosomal protein L24|Ribosomal protein L24]]
*[[Ribosomal protein L31|Ribosomal protein L31]]
*[[Ribosomal protein L32|Ribosomal protein L32]]
*[[Ribosomal protein L33|Ribosomal protein L33]]
*[[Ribosomal protein L34|Ribosomal protein L34]]
*[[Ribosomal protein L35|Ribosomal protein L35]]
*[[Ribosomal protein THX 3D structures|Ribosomal protein THX 3D structures]]
*[[Ribosome 3D structures|Ribosome 3D structures]]
*[[Transfer RNA (tRNA)|Transfer RNA (tRNA)]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermus thermophilus HB8]]
[[Category: Kelley AC]]
[[Category: Kleanthous C]]
[[Category: Lang K]]
[[Category: Meenan NAG]]
[[Category: Ng CL]]
[[Category: Ramakrishnan V]]
[[Category: Sharma A]]