View source for 4gb3


==Human coxsackievirus B3 strain RD coat protein==
<StructureSection load='4gb3' size='340' side='right'caption='[[4gb3]], [[Resolution|resolution]] 2.74&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[4gb3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Coxsackievirus_B3 Coxsackievirus B3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GB3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GB3 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.74&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MYR:MYRISTIC+ACID'>MYR</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4gb3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gb3 OCA], [https://pdbe.org/4gb3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4gb3 RCSB], [https://www.ebi.ac.uk/pdbsum/4gb3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4gb3 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/F8VA14_9ENTO F8VA14_9ENTO] 
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The coxsackievirus-adenovirus receptor (CAR) and decay-accelerating factor (DAF) have been identified as cellular receptors for coxsackievirus B3 (CVB3). The first described DAF-binding isolate was obtained during passage of the prototype strain, Nancy, on rhabdomyosarcoma (RD) cells, which express DAF but very little CAR. Here, the structure of the resulting variant, CVB3-RD, has been solved by X-ray crystallography to 2.74A and a cryo-electron microscopy reconstruction of CVB3-RD complexed with DAF has been refined to 9.0A. This new high resolution structure permits us to correct an error in our previous view of DAF-virus interactions, providing a new footprint of DAF that bridges two adjacent protomers. The contact sites between virus and DAF clearly encompass CVB3-RD residues recently shown to be required for binding to DAF; these residues interact with DAF short consensus repeat (SCR)2, which is known to be essential for virus binding. Based on the new structure, the mode of DAF interaction with CVB3 differs significantly from the mode reported for DAF binding to echoviruses.

The crystal structure of a coxsackievirus B3-RD variant, and a refined 9A cryoEM reconstruction of the virus complexed with decay accelerating factor (DAF), provide a new footprint of DAF onto the virus surface.,Yoder JD, Cifuente JO, Pan J, Bergelson JM, Hafenstein S J Virol. 2012 Sep 12. PMID:22973031<ref>PMID:22973031</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 4gb3" style="background-color:#fffaf0;"></div>

==See Also==
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Coxsackievirus B3]]
[[Category: Large Structures]]
[[Category: Hafenstein S]]
[[Category: Yoder JD]]