View source for 5fyq


==Sirt2 in complex with a 13-mer trifluoroacetylated Ran peptide==
<StructureSection load='5fyq' size='340' side='right'caption='[[5fyq]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5fyq]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FYQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FYQ FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAK:N~6~-(TRIFLUOROACETYL)-L-LYSINE'>FAK</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fyq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fyq OCA], [https://pdbe.org/5fyq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fyq RCSB], [https://www.ebi.ac.uk/pdbsum/5fyq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fyq ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/SIR2_HUMAN SIR2_HUMAN] NAD-dependent protein deacetylase, which deacetylates internal lysines on histone and non-histone proteins. Deacetylates 'Lys-40' of alpha-tubulin. Involved in the control of mitotic exit in the cell cycle, probably via its role in the regulation of cytoskeleton. Deacetylates PCK1, opposing proteasomal degradation. Deacetylates 'Lys-310' of RELA.<ref>PMID:12620231</ref> <ref>PMID:12697818</ref> <ref>PMID:21081649</ref> <ref>PMID:21726808</ref> 
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Sirtuins are NAD+ dependent lysine-deacylases, regulating a variety of cellular processes. The nuclear Sirt1, the cytosolic Sirt2 and the mitochondrial Sirt3 are robust deacetylases, whereas the other sirtuins have preferences for longer acylchains. Most previous studies investigated sirtuin-catalysed deacylation on peptide substrates only. We used the genetic code expansion concept to produce natively folded site-specifically lysine acetylated Sirt1-3 substrate proteins, namely Ran, p53, PEPCK1, MnSOD, CypD and Hsp10, and analysed the deacetylation reaction. Some acetylated proteins such as Ran, p53 and Hsp10 were robustly deacetylated by Sirt1-3. However, other reported sirtuin substrate proteins such as CypD, MnSOD and PEPCK1, were not deacetylated. Using a structural and functional approach, we describe the ability of Sirt1-3 to deacetylate two adjacent acetylated lysine residues. The dynamics of this process has implications for the lifetime of acetyl-modifications on di-lysine-acetylation sites and thus constitutes a new mechanism for the regulation of proteins by acetylation. Our studies support that, besides the primary sequence-context, the protein structure is a major determinant of sirtuin substrate specificity.

Insights into lysine-deacetylation of natively folded substrate proteins by sirtuins.,Knyphausen P, de Boor S, Kuhlmann N, Scislowski L, Extra A, Baldus L, Schacherl M, Baumann U, Neundorf I, Lammers M J Biol Chem. 2016 May 18. pii: jbc.M116.726307. PMID:27226597<ref>PMID:27226597</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 5fyq" style="background-color:#fffaf0;"></div>

==See Also==
*[[Histone deacetylase 3D structures|Histone deacetylase 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Baldus L]]
[[Category: Baumann U]]
[[Category: Extra A]]
[[Category: Knyphausen P]]
[[Category: Lammers M]]
[[Category: Neundorf I]]
[[Category: Schacherl M]]
[[Category: Scislowski L]]
[[Category: De Boor S]]