# Jmol state version 14.32.64  2022-07-26 16:18;
  # fullName = "jmolApplet0__945575941907045__";
  # documentBase = "file:///Users/emartz/DOSFiles/D-disk/ERICS1WS/jmol/fgij/fg.htm?mol=3iyv";
  # codeBase = "file:///Users/emartz/DOSFiles/D-disk/ERICS1WS/jmol/fgij/jsmol/j2s/";


function _setWindowState() {
# width 897;
# height 697;
  stateVersion = 1432064;
  background [xffffff];
  axis1Color = "[xff0000]";
  axis2Color = "[x008000]";
  axis3Color = "[x0000ff]";
  set ambientPercent 30;
  set diffusePercent 84;
  set specular true;
  set specularPercent 22;
  set specularPower 100;
  set specularExponent 4;
  set celShading false;
  set celShadingPower 10;
  set zShadePower 3;
}

function _setFileState() {

  set allowEmbeddedScripts false;
  set appendNew true;
  set appletProxy "";
  set applySymmetryToBonds false;
  set autoBond true;
  set bondRadiusMilliAngstroms 150;
  set bondTolerance 0.45;
  set defaultLattice {0 0 0};
  set defaultLoadFilter "";
  set defaultLoadScript "";
  set defaultStructureDssp true;
  set defaultVDW Auto;
  set forceAutoBond false;
  #set defaultDirectory "";
  #set loadFormat "https://files.rcsb.org/download/%FILE.pdb";
  #set loadLigandFormat "https://files.rcsb.org/ligands/download/%FILE.cif";
  #set smilesUrlFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=true";
  #set nihResolverFormat "https://cactus.nci.nih.gov/chemical/structure";
  #set pubChemFormat "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/%FILE/SDF?record_type=3d";
  set bondingVersion 0;
  set legacyAutoBonding false;
  set legacyAutoBonding false;
  set legacyHAddition false;
  set legacyJavaFloat false;
  set minBondDistance 0.4;
  set minimizationCriterion  0.001;
  set minimizationSteps  100;
  set multipleBondBananas false;
  set pdbAddHydrogens false;
  set pdbGetHeader false;
  set pdbSequential false;
  set percentVdwAtom 23;
  set smallMoleculeMaxAtoms 40000;
  set smartAromatic true;
  load /wiki/images/4/41/3iyv-revdat4.pdb.gz FILTER "*.CA;biomolecule 1;bmchains;/=8";

}

function _setParameterState() {

   set defaultanglelabel "%VALUE %UNITS";
   set defaultcolorscheme "jmol";
   set defaultdistancelabel "%VALUE %UNITS";
   set defaultdrawarrowscale 0.5;
   set defaultlabelpdb "%m%r";
   set defaultlabelxyz "%a";
   set defaultlattice "{0 0 0}";
   set defaultloadfilter "";
   set defaultloadscript "";
   set defaulttorsionlabel "%VALUE %UNITS";
   set defaulttranslucent 0.5;
   set defaultvdw "Auto";
  set allowembeddedscripts true;
  set allowmoveatoms false;
  set allowrotateselected false;
  set animationmode "once";
  set appletproxy "";
  set applysymmetrytobonds false;
  set atomtypes "";
  set autobond true;
  set autofps false;
  set axes window;
  set axesmode 0;
  set axesoffset 0.0;
  set axesscale 2.0;
  set bondmodeor false;
  set bondradiusmilliangstroms 150;
  set bondtolerance 0.45;
  set cartoonbaseedges false;
  set cartoonblockheight 0.5;
  set cartoonblocks false;
  set cartoonfancy false;
  set cartoonladders false;
  set cartoonrockets false;
  set cartoonsteps false;
  set chaincasesensitive false;
  set dataseparator "~~~";
  set defaultstructuredssp true;
  set delaymaximumms 0;
  set dipolescale 1.0;
  set disablepopupmenu false;
  set displaycellparameters true;
  set dotdensity 3;
  set dotscale 1;
  set dotsselectedonly false;
  set dotsurface true;
  set doubleprecision false;
  set dragselected false;
  set drawfontsize 16.0;
  set drawhover false;
  set dsspcalculatehydrogenalways true;
  set ellipsoidarcs false;
  set ellipsoidarrows false;
  set ellipsoidaxes false;
  set ellipsoidaxisdiameter 0.02;
  set ellipsoidball true;
  set ellipsoiddotcount 200;
  set ellipsoiddots false;
  set ellipsoidfill false;
  set energyunits "kJ";
  set forceautobond false;
  set gestureswipefactor 1.0;
  set greyscalerendering false;
  set hbondhxdistancemaximum 2.5;
  set hbondsbackbone false;
  set hbondsrasmol true;
  set hbondssolid false;
  set helixstep 1;
  set helppath "https://chemapps.stolaf.edu/jmol/docs/index.htm";
  set hermitelevel 0;
  set hiddenlinesdashed false;
  set hidenameinpopup false;
  set hidenavigationpoint false;
  set highresolution false;
  set hoverdelay 0.3;
  set infofontsize 20;
  set isosurfacekey false;
  set isosurfacepropertysmoothing true;
  set isosurfacepropertysmoothingpower 7;
  set jmolinjspecview true;
  set justifymeasurements false;
  set labelpointerwidth 2;
  set loadatomdatatolerance 0.01;
  set measureallmodels false;
  set measurementlabels true;
  set meshscale 1;
  set messagestylechime false;
  set minbonddistance 0.4;
  set minimizationcriterion 0.001;
  set minimizationrefresh true;
  set minimizationsilent false;
  set minimizationsteps 100;
  set minpixelselradius 6;
  set modulationscale 1.0;
  set monitorenergy false;
  set multiplebondbananas false;
  set multiplebondradiusfactor 0.0;
  set multiplebondspacing -1.0;
  set navigationperiodic false;
  set navigationspeed 5.0;
  set nbocharges true;
  set nmrpredictformat "https://www.nmrdb.org/service/predictor?POST?molfile=";
  set nmrurlformat "https://www.nmrdb.org/new_predictor?POST?molfile=";
  set partialdots false;
  set particleradius 20.0;
  set pdbaddhydrogens false;
  set pdbgetheader false;
  set pdbsequential false;
  set percentvdwatom 23;
  set pickingspinrate 10;
  set pointgroupdistancetolerance 0.2;
  set pointgrouplineartolerance 8.0;
  set propertyatomnumbercolumncount 0;
  set propertyatomnumberfield 0;
  set propertycolorscheme "roygb";
  set propertydatacolumncount 0;
  set propertydatafield 0;
  set quaternionframe "p";
  set rangeselected false;
  set ribbonaspectratio 16;
  set ribbonborder false;
  set rocketbarrels false;
  set sheetsmoothing 1.0;
  set showhiddenselectionhalos false;
  set showhydrogens true;
  set showmeasurements true;
  set showmodulationvectors false;
  set showmultiplebonds true;
  set shownavigationpointalways false;
  set showunitcelldetails true;
  set slabbyatom false;
  set slabbymolecule false;
  set smallmoleculemaxatoms 40000;
  set smartaromatic true;
  set solventprobe false;
  set solventproberadius 1.2;
  set ssbondsbackbone false;
  set starwidth 0.05;
  set stereodegrees -5;
  set strandcountformeshribbon 7;
  set strandcountforstrands 5;
  set strutdefaultradius 0.3;
  set strutlengthmaximum 7.0;
  set strutsmultiple false;
  set strutspacing 6;
  set tracealpha true;
  set translucent true;
  set twistedsheets false;
  set usenumberlocalization true;
  set vectorscale 1.0;
  set vectorscentered false;
  set vectorsymmetry false;
  set vectortrail 0;
  set vibrationscale 1.0;
  set waitformoveto true;
  set wireframerotation false;
  set zdepth -800;
  set zoomheight false;
  set zoomlarge false;
  set zslab 50;

#user-defined atom sets; 
  @~all_unusual ({});
  @~anomalous_atoms ({});
  @~d_aa_ca ({});
  @~d_aas ({});
  @~hidden4hide_jdef ({});
  @~hidden4isolate_jdef ({});
  @~hidden_jdef ({});
  @~labeledcys ({});
  @~nonstandard_residue_ca ({});
  @~nonstandard_residues ({});
  @~nucleic ({});
  @~polynucleic ({});
  @~protein ({0:22955});

# label defaults;
  select none;
  color label none;
  background label none;
  set labelOffset 4 4;
  set labelAlignment left;
  set labelPointer off;
  font label 13 SansSerif Plain;

}

function _setDataState() {


}

function _setModelState() {

  select ({0:22955});
  Spacefill 8.0;
  select ({204:212 417:424 629:637 842:849 1054:1062 1267:1274 1479:1487 1692:1699 1904:1912 2117:2125 2330:2337 2542:2550 2755:2762 2967:2975 3180:3187 3392:3400 3605:3612 3817:3825 4030:4038 4243:4250 4455:4463 4668:4675 4880:4888 5093:5100 5305:5313 5518:5525 5730:5738 5943:5951 6156:6163 6368:6376 6581:6588 6793:6801 7006:7013 7218:7226 7431:7438 7643:7651 7856:7864 8069:8076 8281:8289 8494:8501 8706:8714 8919:8926 9131:9139 9344:9351 9556:9564 9769:9777 9982:9989 10194:10202 10407:10414 10619:10627 10832:10839 11044:11052 11257:11264 11469:11477 11682:11690 11895:11902 12107:12115 12320:12327 12532:12540 12745:12752 12957:12965 13170:13177 13382:13390 13595:13603 13808:13815 14020:14028 14233:14240 14445:14453 14658:14665 14870:14878 15083:15090 15295:15303 15508:15516 15721:15728 15933:15941 16146:16153 16358:16366 16571:16578 16783:16791 16996:17003 17208:17216 17421:17429 17634:17641 17846:17854 18059:18066 18271:18279 18484:18491 18696:18704 18909:18916 19121:19129 19334:19342 19547:19554 19759:19767 19972:19979 20184:20192 20397:20404 20609:20617 20822:20829 21034:21042 21247:21255 21460:21467 21672:21680 21885:21892 22097:22105 22310:22317 22522:22530 22735:22742 22947:22955});
  color atoms opaque [xcd5c5c];
  select ({0:203 213:416 425:628 638:841 850:1053 1063:1266 1275:1478 1488:1691 1700:1903 1913:2116 2126:2329 2338:2541 2551:2754 2763:2966 2976:3179 3188:3391 3401:3604 3613:3816 3826:4029 4039:4242 4251:4454 4464:4667 4676:4879 4889:5092 5101:5304 5314:5517 5526:5729 5739:5942 5952:6155 6164:6367 6377:6580 6589:6792 6802:7005 7014:7217 7227:7430 7439:7642 7652:7855 7865:8068 8077:8280 8290:8493 8502:8705 8715:8918 8927:9130 9140:9343 9352:9555 9565:9768 9778:9981 9990:10193 10203:10406 10415:10618 10628:10831 10840:11043 11053:11256 11265:11468 11478:11681 11691:11894 11903:12106 12116:12319 12328:12531 12541:12744 12753:12956 12966:13169 13178:13381 13391:13594 13604:13807 13816:14019 14029:14232 14241:14444 14454:14657 14666:14869 14879:15082 15091:15294 15304:15507 15517:15720 15729:15932 15942:16145 16154:16357 16367:16570 16579:16782 16792:16995 17004:17207 17217:17420 17430:17633 17642:17845 17855:18058 18067:18270 18280:18483 18492:18695 18705:18908 18917:19120 19130:19333 19343:19546 19555:19758 19768:19971 19980:20183 20193:20396 20405:20608 20618:20821 20830:21033 21043:21246 21256:21459 21468:21671 21681:21884 21893:22096 22106:22309 22318:22521 22531:22734 22743:22946});
  color atoms opaque [x00bfff];

  set echo off;set echo "%SCALE" off;
  set echo bottom left; echo " ";
  font echo 18 SansSerif Bold; color echo [x000000];
  set echo ID "creditline" [100 0%]; echo "FirstGlance in Jmol  ";
  font echo 15 SansSerif Plain; color echo [x989898]; color echo background [xffffff];
  set echo ID "creditline" hidden;
  set echo top left; echo " 3IYV";
  font echo 20 SansSerif Bold; color echo [x000000]; color echo background [xffffff];
  set echo ID "echotr" [100 100%]; echo " ";
  font echo 20 SansSerif Bold; color echo [x000000];

  hover "%n %r, Chain=%c, Element=%e, Atom=%a";

  frank on;
  font frank 16 SansSerif Plain;
  select *;
  set fontScaling false;

}

function _setPerspectiveState() {
  set perspectiveModel 11;
  set scaleAngstromsPerInch 0;
  set perspectiveDepth true;
  set visualRange 5;
  set cameraDepth 3;
  boundbox corners {-334.92526492499996 -364.56576402499996 -370.264} {334.92526492499996 364.56576402499996 370.264} # volume = 361680643.91815645;
  center {0 0 0};
   moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {0 0 0} 411.64665245764456 {0 0 0} 0 0 0 3.0 0.0 0.0;
  save orientation "default";
  moveto 0.0 {0 0 1 0} 90.0 0.0 0.0 {0 0 0} 411.64665245764456 {0 0 0} 0 0 0 3.0 0.0 0.0;;
  slab 100;depth 0;
  set slabRange 0.0;
  set spinX 0; set spinY 5; set spinZ 0; set spinFps 10;  set navX 0; set navY 0; set navZ 0; set navFps 10;
}

function _setSelectionState() {
  set hideNotSelected false;
}

function _setState() {

ppdiaCaptionCmd = "changeCaption('Clathrin coat [[3iyv]]:  <b><span class=\"text-primary\">Heavy chains</span>, <span class=\"text-brown\">Light chains</span></b>. Model was automatically simplified by FirstGlance to every 8th alpha carbon.','white','black');";
 javascript @ppdiaCaptionCmd;

  initialize;
  set refreshing false;
  _setWindowState;
  _setFileState;
  _setParameterState;
  _setDataState;
  _setModelState;
  _setPerspectiveState;
  _setSelectionState;
  set refreshing true;
  set antialiasDisplay true;
  set antialiasTranslucent true;
  set antialiasImages true;
}

_setState;