Crystal structure of FeII/MnII CtCADD from Chlamydia trachomatisCrystal structure of FeII/MnII CtCADD from Chlamydia trachomatis

Structural highlights

8va9 is a 2 chain structure with sequence from Chlamydia trachomatis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.35Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CADD_CHLTR Involved in de novo para-aminobenzoate (PABA) biosynthesis (PubMed:23972426, PubMed:32967910, PubMed:36122239). Acts as a self-sacrificing or 'suicide' enzyme that utilizes its own active site tyrosine residue(s) as the substrate for PABA synthesis (PubMed:32967910, PubMed:36122239). The side chain of the tyrosine residue is released from the protein backbone via cleavage of the C(alpha)-C(beta) bond, leaving a glycine in place of the original tyrosine residue (PubMed:32967910, PubMed:36122239). Reaction requires O(2) and a reduced dimetal cofactor (PubMed:32967910, PubMed:36122239).[1] [2] [3] Was also identified as a specific toxin that associates with death domains of tumor necrosis factor family (TNF) receptors and induces apoptosis in mammalian cell lines through a Caspase-dependent mechanism.[4] [5]

Publication Abstract from PubMed

Chlamydia protein associating with death domains (CtCADD) is involved in the biosynthesis of p-aminobenzoic acid (pABA) for integration into folate, a critical cofactor that is required for pathogenic survival. CADD activates dioxygen and utilizes its own tyrosine and lysine as synthons to furnish the carboxylate, carbon backbone, and amine group of pABA in a complex multistep mechanism. Unlike other members of the heme oxygenase-like dimetal oxidase (HDO) superfamily that typically house an Fe(2) cofactor, previous activity studies have shown that CtCADD likely uses a heterobimetallic Fe/Mn center. The structure of the Fe(2+)/Mn(2+) cofactor and how the conserved HDO scaffold mediates metal selectivity have remained enigmatic. Adopting an in crystallo metalation approach, CtCADD was solved in the apo, Fe(2+)(2), Mn(2+)(2), and catalytically active Fe(2+)/Mn(2+) forms to identify the probable site for Mn binding. The analysis of CtCADD active-site variants further reinforces the importance of the secondary coordination sphere on cofactor preference for competent pABA formation. Rapid kinetic optical and electron paramagnetic resonance (EPR) studies show that the heterobimetallic cofactor selectively reacts with dioxygen and likely initiates pABA assembly through the formation of a transient tyrosine radical intermediate and a resultant heterobimetallic Mn(3+)/Fe(3+) cluster.

Assembly of a Heterobimetallic Fe/Mn Cofactor in the para-Aminobenzoate Synthase Chlamydia Protein Associating with Death Domains (CADD) Initiates Long-Range Radical Hole-Hopping.,Phan HN, Swartz PD, Gangopadhyay M, Guo Y, Smirnov AI, Makris TM Biochemistry. 2024 Oct 29. doi: 10.1021/acs.biochem.4c00326. PMID:39471288[6]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Satoh Y, Kuratsu M, Kobayashi D, Dairi T. New gene responsible for para-aminobenzoate biosynthesis. J Biosci Bioeng. 2014 Feb;117(2):178-183. PMID:23972426 doi:10.1016/j.jbiosc.2013.07.013
  2. Macias-Orihuela Y, Cast T, Crawford I, Brandecker KJ, Thiaville JJ, Murzin AG, de Crécy-Lagard V, White RH, Allen KD. An Unusual Route for p-Aminobenzoate Biosynthesis in Chlamydia trachomatis Involves a Probable Self-Sacrificing Diiron Oxygenase. J Bacteriol. 2020 Sep 23;202(20):e00319-20. PMID:32967910 doi:10.1128/JB.00319-20
  3. Manley OM, Phan HN, Stewart AK, Mosley DA, Xue S, Cha L, Bai H, Lightfoot VC, Rucker PA, Collins L, Williams TI, Chang WC, Guo Y, Makris TM. Self-sacrificial tyrosine cleavage by an Fe:Mn oxygenase for the biosynthesis of para-aminobenzoate in Chlamydia trachomatis. Proc Natl Acad Sci U S A. 2022 Sep 27;119(39):e2210908119. PMID:36122239 doi:10.1073/pnas.2210908119
  4. Stenner-Liewen F, Liewen H, Zapata JM, Pawlowski K, Godzik A, Reed JC. CADD, a Chlamydia protein that interacts with death receptors. J Biol Chem. 2002 Mar 22;277(12):9633-6. PMID:11805081 doi:10.1074/jbc.C100693200
  5. Schwarzenbacher R, Stenner-Liewen F, Liewen H, Robinson H, Yuan H, Bossy-Wetzel E, Reed JC, Liddington RC. Structure of the Chlamydia protein CADD reveals a redox enzyme that modulates host cell apoptosis. J Biol Chem. 2004 Jul 9;279(28):29320-4. Epub 2004 Apr 15. PMID:15087448 doi:10.1074/jbc.M401268200
  6. Phan HN, Swartz PD, Gangopadhyay M, Guo Y, Smirnov AI, Makris TM. Assembly of a Heterobimetallic Fe/Mn Cofactor in the para-Aminobenzoate Synthase Chlamydia Protein Associating with Death Domains (CADD) Initiates Long-Range Radical Hole-Hopping. Biochemistry. 2024 Oct 29. PMID:39471288 doi:10.1021/acs.biochem.4c00326

8va9, resolution 2.35Å

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