XhpG hydrolase mutant S98A of Xenorhabdus hominickiiXhpG hydrolase mutant S98A of Xenorhabdus hominickii

Structural highlights

8qzu is a 1 chain structure with sequence from Xenorhabdus hominickii. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.18Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A0A2G0QDP0_9GAMM

Publication Abstract from PubMed

Pyrrolizidine alkaloids (PAs) are a structurally diverse group of heterocyclic specialized metabolites characterized by a core structure comprising a hexahydro-1H-pyrrolizine. PAs are synthesized through two main pathways. In plants, assembly occurs via a homospermidine synthase, and in bacteria, through combined action of a nonribosomal peptide synthetase and a Baeyer-Villiger monooxygenase. While the toxic properties of plant-derived PAs and their prevalence in animal and human foods have been extensively studied, the biological roles and biosynthesis of more complex bacterial PAs are not well understood. Here, we report the identification and characterization of a bacterial biosynthetic gene cluster from Xenorhabdus hominickii, xhpA-G, which is responsible for producing the PA pseudo-dimer pyrrolizwilline. Analysis of X. hominickii promoter exchange mutants together with heterologous expression of xhpA-G in E. coli, revealed a set of pathway intermediates, two of which were chemically synthesized, as well as multiple derivatives. This information was leveraged to propose a detailed biosynthetic pathway to pyrrolizwilline. Furthermore, we have characterized the hydrolase XhpG, the key enzyme in the conversion of the pathway intermediate pyrrolizixenamide to pyrrolizwilline, using X-ray crystallography and small-angle X-ray scattering (SAXS).

Pyrrolizwilline, a unique bacterial alkaloid assembled by a nonribosomal peptide synthetase and non-enzymatic dimerization.,Effert J, Westphalen M, Calderari A, Shi YM, Elamri I, Najah S, Grun P, Li Y, Gruez A, Weissman KJ, Bode HB Angew Chem Int Ed Engl. 2024 Oct 20:e202411258. doi: 10.1002/anie.202411258. PMID:39428351[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Effert J, Westphalen M, Calderari A, Shi YM, Elamri I, Najah S, Grün P, Li Y, Gruez A, Weissman KJ, Bode HB. Pyrrolizwilline, a unique bacterial alkaloid assembled by a nonribosomal peptide synthetase and non-enzymatic dimerization. Angew Chem Int Ed Engl. 2024 Oct 20:e202411258. PMID:39428351 doi:10.1002/anie.202411258

8qzu, resolution 1.18Å

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