T95R mutant IRF4 DNA-binding domain bound to an DNA containing GATA motifT95R mutant IRF4 DNA-binding domain bound to an DNA containing GATA motif

Structural highlights

8jko is a 8 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.95Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

F2Z3D5_HUMAN

Publication Abstract from PubMed

Interferon regulatory factor 4 (IRF4) is a transcription factor that regulates the development and function of immune cells. Recently, a new multimorphic mutation T95R was identified in the IRF4 DNA-binding domain (DBD) in patients with autosomal dominant combined immune deficiency. Here, we characterized the interactions of the wild-type IRF4-DBD (IRF4-DBD(WT)) and T95R mutant (IRF4-DBD(T95R)) with a canonical DNA sequence and several noncanonical DNA sequences. We found that compared to IRF4-DBD(WT), IRF4-DBD(T95R) exhibits higher binding affinities for both canonical and noncanonical DNAs, with the highest preference for the noncanonical GATA sequence. The crystal structures of IRF4-DBD(WT) in complex with the GATA sequence and IRF4-DBD(T95R) in complexes with both canonical and noncanonical DNAs were determined, showing that the T95R mutation enhances the interactions of IRF4-DBD(T95R) with the canonical and noncanonical DNAs to achieve higher affinity and specificity. Collectively, our data provide the molecular basis for the gain-of-function and new function of IRF4(T95R).

Molecular basis for the functional roles of the multimorphic T95R mutation of IRF4 causing human autosomal dominant combined immunodeficiency.,Wang G, Feng X, Ding J Structure. 2023 Aug 31:S0969-2126(23)00293-9. doi: 10.1016/j.str.2023.08.013. PMID:37683642[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Wang G, Feng X, Ding J. Molecular basis for the functional roles of the multimorphic T95R mutation of IRF4 causing human autosomal dominant combined immunodeficiency. Structure. 2023 Aug 31:S0969-2126(23)00293-9. PMID:37683642 doi:10.1016/j.str.2023.08.013

8jko, resolution 2.95Å

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