Crystal structure of a secretory phospholipase A2 from Sciscionella marinaCrystal structure of a secretory phospholipase A2 from Sciscionella marina

Structural highlights

7ygk is a 1 chain structure with sequence from Sciscionella marina. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.24Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

Secretory phospholipase A(2) (sPLA(2)), which hydrolyzes the sn-2 acyl bond of lecithin in a Ca(2+)-dependent manner, is an important enzyme in the oil and oleochemical industries. However, most sPLA(2)s are not stable under process conditions. Therefore, a thermostable sPLA(2) was investigated in this study. A marine bacterial sPLA(2) isolated from Sciscionella marina (Sm-sPLA(2)) was catalytically active even after 5 h of incubation at high temperatures of up to 50 degrees C, which is outstanding compared with a representative bacterial sPLA(2) (i.e. sPLA(2) from Streptomyces violaceoruber; Sv-sPLA(2)). Consistent with this, the melting temperature of Sm-sPLA(2) was measured to be 7.7 degrees C higher than that of Sv-sPLA(2). Furthermore, Sm-sPLA(2) exhibited an improved biotransformation performance compared with Sv-sPLA(2) in the hydrolysis of soy lecithin to lysolecithin and free fatty acids at 50 degrees C. Structural and mutagenesis studies revealed that the Trp41-mediated anchoring of a Ca(2+)-binding loop into the rest of the protein body is directly linked to the thermal stability of Sm-sPLA(2). This finding provides a novel structural insight into the thermostability of sPLA(2) and could be applied to create mutant proteins with enhanced industrial potential.

Structural and functional characterization of a thermostable secretory phospholipase A(2) from Sciscionella marina and its application in liposome biotransformation.,Kang BG, Kwon SY, Lee HR, Hwang Y, Youn SY, Oh C, Park JB, Cha SS Acta Crystallogr D Struct Biol. 2023 Feb 1;79(Pt 2):188-197. doi: , 10.1107/S2059798323000384. Epub 2023 Feb 6. PMID:36762864[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Kang BG, Kwon SY, Lee HR, Hwang Y, Youn SY, Oh C, Park JB, Cha SS. Structural and functional characterization of a thermostable secretory phospholipase A(2) from Sciscionella marina and its application in liposome biotransformation. Acta Crystallogr D Struct Biol. 2023 Feb 1;79(Pt 2):188-197. PMID:36762864 doi:10.1107/S2059798323000384

7ygk, resolution 1.24Å

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