Crystal structure of metacaspase 4 from ArabidopsisCrystal structure of metacaspase 4 from Arabidopsis

Structural highlights

6w8s is a 4 chain structure with sequence from Arabidopsis thaliana. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3.484Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

MCA4_ARATH Cysteine protease that cleaves specifically after arginine or lysine residues. Does not cleave caspase-specific substrates. Plays a positive regulatory role in biotic and abiotic stress-induced programmed cell death.[1] [2] [3]

Publication Abstract from PubMed

Plant metacaspases mediate programmed cell death in development, biotic and abiotic stresses, damage-induced immune response, and resistance to pathogen attack. Most metacaspases require Ca(2+) for their activation and substrate processing. However, the Ca(2+)-dependent activation mechanism remains elusive. Here we report the crystal structures of Metacaspase 4 from Arabidopsis thaliana (AtMC4) that modulates Ca(2+)-dependent, damage-induced plant immune defense. The AtMC4 structure exhibits an inhibitory conformation in which a large linker domain blocks activation and substrate access. In addition, the side chain of Lys225 in the linker domain blocks the active site by sitting directly between two catalytic residues. We show that the activation of AtMC4 and cleavage of its physiological substrate involve multiple cleavages in the linker domain upon activation by Ca(2+). Our analysis provides insight into the Ca(2+)-dependent activation of AtMC4 and lays the basis for tuning its activity in response to stresses for engineering of more sustainable crops for food and biofuels.

Structural basis for Ca(2+)-dependent activation of a plant metacaspase.,Zhu P, Yu XH, Wang C, Zhang Q, Liu W, McSweeney S, Shanklin J, Lam E, Liu Q Nat Commun. 2020 May 7;11(1):2249. doi: 10.1038/s41467-020-15830-8. PMID:32382010[4]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Vercammen D, van de Cotte B, De Jaeger G, Eeckhout D, Casteels P, Vandepoele K, Vandenberghe I, Van Beeumen J, Inzé D, Van Breusegem F. Type II metacaspases Atmc4 and Atmc9 of Arabidopsis thaliana cleave substrates after arginine and lysine. J Biol Chem. 2004 Oct 29;279(44):45329-36. PMID:15326173 doi:10.1074/jbc.M406329200
  2. Watanabe N, Lam E. Calcium-dependent activation and autolysis of Arabidopsis metacaspase 2d. J Biol Chem. 2011 Mar 25;286(12):10027-40. PMID:21209078 doi:10.1074/jbc.M110.194340
  3. Watanabe N, Lam E. Arabidopsis metacaspase 2d is a positive mediator of cell death induced during biotic and abiotic stresses. Plant J. 2011 Jun;66(6):969-82. PMID:21395887 doi:10.1111/j.1365-313X.2011.04554.x
  4. Zhu P, Yu XH, Wang C, Zhang Q, Liu W, McSweeney S, Shanklin J, Lam E, Liu Q. Structural basis for Ca(2+)-dependent activation of a plant metacaspase. Nat Commun. 2020 May 7;11(1):2249. PMID:32382010 doi:10.1038/s41467-020-15830-8

6w8s, resolution 3.48Å

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