Crystal structure of Malate dehydrogenase from Metallosphaera sedulaCrystal structure of Malate dehydrogenase from Metallosphaera sedula

Structural highlights

6ihd is a 2 chain structure with sequence from Metallosphaera sedula. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.3Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A0A088E2H7_9CREN

Publication Abstract from PubMed

Metallosphaera sedula is a thermoacidophilic autotrophic archaeon and known to utilize the 3-hydroxypropionate/4-hydroxybutyrate cycle (3-HP/4-HB cycle) as a carbon fixation pathway. The 3-HP/4-HB cycle in M. sedula is associated with central metabolism, and malate dehydrogenase (MDH) is an enzyme involved in the central metabolism that converts malate to oxaloacetate. To elucidate the enzymatic properties of MDH from M. sedula (MsMDH), we determined the crystal structure of MsMDH as a complex with NAD(+) and a ternary complex with malate and NAD(+). Based on its complex structures and biochemical experiments, we observed that MsMDH can utilize both NAD(+) and NADP(+) as a cofactor. In addition, we revealed that MsMDH shows a conformational change at the active site upon substrate binding. Based on the comparison with other MDHs, we revealed that MsMDH was distinguished from general MDHs due to a Lys80 residue, and this difference is likely to influence the unique cofactor specificity of MsMDH.

Crystal structure and biochemical characterization of malate dehydrogenase from Metallosphaera sedula.,Lee D, Hong J, Kim KJ Biochem Biophys Res Commun. 2019 Feb 12;509(3):833-838. doi:, 10.1016/j.bbrc.2019.01.018. Epub 2019 Jan 10. PMID:30638660[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Lee D, Hong J, Kim KJ. Crystal structure and biochemical characterization of malate dehydrogenase from Metallosphaera sedula. Biochem Biophys Res Commun. 2019 Feb 12;509(3):833-838. PMID:30638660 doi:10.1016/j.bbrc.2019.01.018

6ihd, resolution 2.30Å

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